Cluster: HRGMv2_4539_CGC11
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_4539
- CGC Family ID: CGCFAM_10295
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_4539_10 | HRGMv2_4539_10_7 | 5565 | 6527 | - | GT2 |
| NULL(UNKNOWN) | HRGMv2_4539_10 | HRGMv2_4539_10_8 | 6542 | 9082 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_4539_10 | HRGMv2_4539_10_9 | 9463 | 12153 | - | 9.B.74.1.3 |
| STP | HRGMv2_4539_10 | HRGMv2_4539_10_10 | 12365 | 12982 | + | TetR_N |
| CAZyme | HRGMv2_4539_10 | HRGMv2_4539_10_11 | 13121 | 14632 | + | CBM91 | GH43_12 |
Gene ID: HRGMv2_4539_10_7
Type: CAZyme
Location: 5565 - 6527 (-)
Type: CAZyme
Location: 5565 - 6527 (-)
Gene ID: HRGMv2_4539_10_8
Type:
Location: 6542 - 9082 (-)
Type:
Location: 6542 - 9082 (-)
Gene ID: HRGMv2_4539_10_9
Type: TC
Location: 9463 - 12153 (-)
Type: TC
Location: 9463 - 12153 (-)
Gene ID: HRGMv2_4539_10_10
Type: STP
Location: 12365 - 12982 (+)
Type: STP
Location: 12365 - 12982 (+)
Gene ID: HRGMv2_4539_10_11
Type: CAZyme
Location: 13121 - 14632 (+)
Type: CAZyme
Location: 13121 - 14632 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
Ruminococcus_C
Species
Ruminococcus_C sp019417665
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_4539_10_10 | vegan > omnivore | 1.65742 | 0.01232 |