Genome Details
Selected Rep_genome_ID: HRGMv2_0829
Total Genomes Found: 8
Total Genomes Found: 8
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp000435835
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| C55.bin_13 | 3,260,363 | 99.19% | 0.81% | China(Inner Mongolia) | Asia | IMGG |
| CGMR051176 | 2,777,568 | 92.38% | 0.25% | China | Asia | CGMR |
| DM001_maxbin.012_sub | 3,088,303 | 98.82% | 1.77% | NA | Africa | H3AfricaPhase2 |
| GasparriniAJ_2019_SRR9865776_bin.2 | 3,146,621 | 98.31% | 0.246% | US | North America | ELGG |
| HRGMv2_0829 | 3,190,161 | 96.77% | 0% | Malaysia | Asia | HRGM |
| MGYG000001089 | 3,268,107 | 99.19% | 1.06% | Sweden | Europe | UHGG |
| REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-E-H_K_12_1914.44 | 2,448,498 | 95.81% | 0% | NA | Africa | Hadza |
| Rep_1396 | 3,080,992 | 98.3871% | 1.77419% | NA | NA | WIS |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| HRGMv2_0829_CGC12 | CGCFAM_00015 | Yes | 5 | 3 | |
| HRGMv2_0829_CGC11 | CGCFAM_00040 | Yes | 3 | 2 | |
| HRGMv2_0829_CGC25 | CGCFAM_00067 | Yes | 5 | 2 | galactan |
| HRGMv2_0829_CGC33 | CGCFAM_00334 | Yes | 3 | 1 | |
| HRGMv2_0829_CGC22 | CGCFAM_00658 | Yes | 24 | 13 | |
| HRGMv2_0829_CGC14 | CGCFAM_01057 | Yes | 8 | 3 | |
| HRGMv2_0829_CGC34 | CGCFAM_01490 | Yes | 3 | 2 | beta-mannan |
| HRGMv2_0829_CGC24 | CGCFAM_02074 | Yes | 4 | 1 | |
| HRGMv2_0829_CGC3 | CGCFAM_02256 | Yes | 20 | 4 | |
| HRGMv2_0829_CGC27 | CGCFAM_02599 | Yes | 6 | 1 | |
| HRGMv2_0829_CGC1 | CGCFAM_02918 | Yes | 4 | 1 | |
| HRGMv2_0829_CGC5 | CGCFAM_04422 | Yes | 3 | 1 | |
| HRGMv2_0829_CGC2 | CGCFAM_04946 | Yes | 5 | 1 | |
| HRGMv2_0829_CGC18 | CGCFAM_05379 | Yes | 3 | 1 | |
| HRGMv2_0829_CGC9 | CGCFAM_06567 | Yes | 6 | 3 | |
| HRGMv2_0829_CGC15 | CGCFAM_07134 | Yes | 4 | 1 | |
| HRGMv2_0829_CGC16 | CGCFAM_09804 | Yes | 7 | 2 | |
| HRGMv2_0829_CGC17 | CGCFAM_09805 | Yes | 12 | 1 | |
| HRGMv2_0829_CGC35 | CGCFAM_09806 | Yes | 6 | 2 | |
| HRGMv2_0829_CGC4 | CGCFAM_09807 | Yes | 6 | 2 |
Top CAZyme Families