Cluster: HRGMv2_0829_CGC2
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0829
- CGC Family ID: CGCFAM_04946
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | HRGMv2_0829_2 | HRGMv2_0829_2_23 | 26131 | 27759 | + | GH13_31 |
| TC | HRGMv2_0829_2 | HRGMv2_0829_2_24 | 27836 | 28732 | - | 2.A.7.3.31 |
| NULL(UNKNOWN) | HRGMv2_0829_2 | HRGMv2_0829_2_25 | 28974 | 29789 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | HRGMv2_0829_2 | HRGMv2_0829_2_26 | 29843 | 30058 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0829_2 | HRGMv2_0829_2_27 | 30096 | 30521 | + | 3.A.1.3.15 |
Gene ID: HRGMv2_0829_2_23
Type: CAZyme
Location: 26131 - 27759 (+)
Type: CAZyme
Location: 26131 - 27759 (+)
Gene ID: HRGMv2_0829_2_24
Type: TC
Location: 27836 - 28732 (-)
Type: TC
Location: 27836 - 28732 (-)
Gene ID: HRGMv2_0829_2_25
Type:
Location: 28974 - 29789 (+)
Type:
Location: 28974 - 29789 (+)
Gene ID: HRGMv2_0829_2_26
Type:
Location: 29843 - 30058 (+)
Type:
Location: 29843 - 30058 (+)
Gene ID: HRGMv2_0829_2_27
Type: TC
Location: 30096 - 30521 (+)
Type: TC
Location: 30096 - 30521 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp000435835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0829_2_23 | vegan > omnivore | 1.52515 | 0.00224 |