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Cluster: HRGMv2_0829_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0829_2 HRGMv2_0829_2_143 154049 154771 - CE4
pfam HRGMv2_0829_2 HRGMv2_0829_2_144 154915 155739 + Lactamase_B
TC HRGMv2_0829_2 HRGMv2_0829_2_145 155990 157093 + 3.A.1.1.22
TF HRGMv2_0829_2 HRGMv2_0829_2_146 157130 158071 + HTH_8
TC HRGMv2_0829_2 HRGMv2_0829_2_147 158282 159514 + 3.A.1.1.16
TC HRGMv2_0829_2 HRGMv2_0829_2_148 159577 160500 + 3.A.1.1.2
TC HRGMv2_0829_2 HRGMv2_0829_2_149 160502 161401 + 3.A.1.1.26
TF HRGMv2_0829_2 HRGMv2_0829_2_150 161555 162571 + LacI
CAZyme HRGMv2_0829_2 HRGMv2_0829_2_151 162617 164116 + GH77
CAZyme HRGMv2_0829_2 HRGMv2_0829_2_152 164119 166479 + GT35
TC HRGMv2_0829_2 HRGMv2_0829_2_153 166683 167459 + 1.A.1.17.2
pfam HRGMv2_0829_2 HRGMv2_0829_2_154 167524 168486 + 2-Hacid_dh | 2-Hacid_dh_C
pfam HRGMv2_0829_2 HRGMv2_0829_2_155 168823 170490 + HMGL-like | LeuA_dimer | IPMS_D2
TC HRGMv2_0829_2 HRGMv2_0829_2_156 170763 172139 + 2.A.25.1.4
CAZyme HRGMv2_0829_2 HRGMv2_0829_2_157 172285 173244 + GH73
pfam HRGMv2_0829_2 HRGMv2_0829_2_158 173404 173673 - Acylphosphatase
TC HRGMv2_0829_2 HRGMv2_0829_2_159 173687 174745 - 3.A.1.11.7
TC HRGMv2_0829_2 HRGMv2_0829_2_160 174746 175549 - 3.A.1.11.8
TC HRGMv2_0829_2 HRGMv2_0829_2_161 175550 176389 - 3.A.1.11.1
TC HRGMv2_0829_2 HRGMv2_0829_2_162 176391 177434 - 3.A.1.11.8
Gene ID: HRGMv2_0829_2_143
Type: CAZyme
Location: 154049 - 154771 (-)
Gene ID: HRGMv2_0829_2_144
Type: pfam
Location: 154915 - 155739 (+)
Gene ID: HRGMv2_0829_2_145
Type: TC
Location: 155990 - 157093 (+)
Gene ID: HRGMv2_0829_2_146
Type: TF
Location: 157130 - 158071 (+)
Gene ID: HRGMv2_0829_2_147
Type: TC
Location: 158282 - 159514 (+)
Gene ID: HRGMv2_0829_2_148
Type: TC
Location: 159577 - 160500 (+)
Gene ID: HRGMv2_0829_2_149
Type: TC
Location: 160502 - 161401 (+)
Gene ID: HRGMv2_0829_2_150
Type: TF
Location: 161555 - 162571 (+)
Gene ID: HRGMv2_0829_2_151
Type: CAZyme
Location: 162617 - 164116 (+)
Gene ID: HRGMv2_0829_2_152
Type: CAZyme
Location: 164119 - 166479 (+)
Gene ID: HRGMv2_0829_2_153
Type: TC
Location: 166683 - 167459 (+)
Gene ID: HRGMv2_0829_2_154
Type: pfam
Location: 167524 - 168486 (+)
Gene ID: HRGMv2_0829_2_155
Type: pfam
Location: 168823 - 170490 (+)
Gene ID: HRGMv2_0829_2_156
Type: TC
Location: 170763 - 172139 (+)
Gene ID: HRGMv2_0829_2_157
Type: CAZyme
Location: 172285 - 173244 (+)
Gene ID: HRGMv2_0829_2_158
Type: pfam
Location: 173404 - 173673 (-)
Gene ID: HRGMv2_0829_2_159
Type: TC
Location: 173687 - 174745 (-)
Gene ID: HRGMv2_0829_2_160
Type: TC
Location: 174746 - 175549 (-)
Gene ID: HRGMv2_0829_2_161
Type: TC
Location: 175550 - 176389 (-)
Gene ID: HRGMv2_0829_2_162
Type: TC
Location: 176391 - 177434 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0829_2_153 vegan > omnivore 5.10179 0.00224
HRGMv2_0829_2_154 vegan > omnivore 2.45617 0.00224
HRGMv2_0829_2_159 vegan > omnivore 5.24314 0.00224

🧭 Explore Read Mapping of CGC

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