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Cluster: HRGMv2_0829_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme HRGMv2_0829_6 HRGMv2_0829_6_39 42172 43611 + GH1
TC HRGMv2_0829_6 HRGMv2_0829_6_40 43653 43955 + 4.A.3.2.7
TC HRGMv2_0829_6 HRGMv2_0829_6_41 44000 45370 + 4.A.3.2.9
TC HRGMv2_0829_6 HRGMv2_0829_6_42 45395 45706 + 4.A.3.2.2
CAZyme HRGMv2_0829_6 HRGMv2_0829_6_43 45866 48667 + CBM4 | CBM4 | CBM4 | GH16_3
pfam HRGMv2_0829_6 HRGMv2_0829_6_44 48729 50243 - Metallophos | 5_nucleotid_C
TC HRGMv2_0829_6 HRGMv2_0829_6_45 50478 51842 + 2.A.35.2.1
Gene ID: HRGMv2_0829_6_39
Type: CAZyme
Location: 42172 - 43611 (+)
Gene ID: HRGMv2_0829_6_40
Type: TC
Location: 43653 - 43955 (+)
Gene ID: HRGMv2_0829_6_41
Type: TC
Location: 44000 - 45370 (+)
Gene ID: HRGMv2_0829_6_42
Type: TC
Location: 45395 - 45706 (+)
Gene ID: HRGMv2_0829_6_43
Type: CAZyme
Location: 45866 - 48667 (+)
Gene ID: HRGMv2_0829_6_44
Type: pfam
Location: 48729 - 50243 (-)
Gene ID: HRGMv2_0829_6_45
Type: TC
Location: 50478 - 51842 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
HRGMv2_0829_6_40 vegan > omnivore 1.08544 0.00224
HRGMv2_0829_6_45 vegan > omnivore 3.80375 0.00224

🧭 Explore Read Mapping of CGC

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