Cluster: HRGMv2_0829_CGC1
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0829
- CGC Family ID: CGCFAM_02918
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0829_2 | HRGMv2_0829_2_2 | 666 | 2036 | + | 2.A.2.3.3 |
| TF | HRGMv2_0829_2 | HRGMv2_0829_2_3 | 2647 | 3507 | - | HTH_AraC | HTH_AraC |
| TF | HRGMv2_0829_2 | HRGMv2_0829_2_4 | 3842 | 4828 | + | LacI |
| CAZyme | HRGMv2_0829_2 | HRGMv2_0829_2_5 | 4895 | 6358 | - | GH13_18 |
Gene ID: HRGMv2_0829_2_2
Type: TC
Location: 666 - 2036 (+)
Type: TC
Location: 666 - 2036 (+)
Gene ID: HRGMv2_0829_2_3
Type: TF
Location: 2647 - 3507 (-)
Type: TF
Location: 2647 - 3507 (-)
Gene ID: HRGMv2_0829_2_4
Type: TF
Location: 3842 - 4828 (+)
Type: TF
Location: 3842 - 4828 (+)
Gene ID: HRGMv2_0829_2_5
Type: CAZyme
Location: 4895 - 6358 (-)
Type: CAZyme
Location: 4895 - 6358 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp000435835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0829_2_3 | vegan > omnivore | 2.65726 | 0.00224 |