Cluster: HRGMv2_0829_CGC18
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0829
- CGC Family ID: CGCFAM_05379
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0829_7 | HRGMv2_0829_7_34 | 28307 | 29689 | + | 2.A.66.1.13 |
| CAZyme | HRGMv2_0829_7 | HRGMv2_0829_7_35 | 29844 | 30569 | - | CE4 |
| TC | HRGMv2_0829_7 | HRGMv2_0829_7_36 | 30948 | 32237 | + | 2.A.40.1.2 |
Gene ID: HRGMv2_0829_7_34
Type: TC
Location: 28307 - 29689 (+)
Type: TC
Location: 28307 - 29689 (+)
Gene ID: HRGMv2_0829_7_35
Type: CAZyme
Location: 29844 - 30569 (-)
Type: CAZyme
Location: 29844 - 30569 (-)
Gene ID: HRGMv2_0829_7_36
Type: TC
Location: 30948 - 32237 (+)
Type: TC
Location: 30948 - 32237 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp000435835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0829_7_35 | vegan > omnivore | 2.20193 | 0.00224 |
| HRGMv2_0829_7_36 | vegan > omnivore | 1.08864 | 0.00224 |