Cluster: HRGMv2_0829_CGC27
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0829
- CGC Family ID: CGCFAM_02599
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0829_14 | HRGMv2_0829_14_27 | 24377 | 25957 | + | 3.A.18.1.1 |
| NULL(UNKNOWN) | HRGMv2_0829_14 | HRGMv2_0829_14_28 | 25985 | 26290 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | HRGMv2_0829_14 | HRGMv2_0829_14_29 | 26409 | 27335 | - | CE4 |
| TC | HRGMv2_0829_14 | HRGMv2_0829_14_30 | 28088 | 28561 | + | 2.A.85.4.3 |
| NULL(UNKNOWN) | HRGMv2_0829_14 | HRGMv2_0829_14_31 | 28610 | 28789 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | HRGMv2_0829_14 | HRGMv2_0829_14_32 | 28876 | 30069 | - | 2.A.23.2.2 |
Gene ID: HRGMv2_0829_14_27
Type: TC
Location: 24377 - 25957 (+)
Type: TC
Location: 24377 - 25957 (+)
Gene ID: HRGMv2_0829_14_28
Type:
Location: 25985 - 26290 (-)
Type:
Location: 25985 - 26290 (-)
Gene ID: HRGMv2_0829_14_29
Type: CAZyme
Location: 26409 - 27335 (-)
Type: CAZyme
Location: 26409 - 27335 (-)
Gene ID: HRGMv2_0829_14_30
Type: TC
Location: 28088 - 28561 (+)
Type: TC
Location: 28088 - 28561 (+)
Gene ID: HRGMv2_0829_14_31
Type:
Location: 28610 - 28789 (-)
Type:
Location: 28610 - 28789 (-)
Gene ID: HRGMv2_0829_14_32
Type: TC
Location: 28876 - 30069 (-)
Type: TC
Location: 28876 - 30069 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp000435835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0829_14_28 | vegan > omnivore | 3.41473 | 0.00224 |