Cluster: HRGMv2_0829_CGC4
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: HRGMv2_0829
- CGC Family ID: CGCFAM_09807
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0829_3 | HRGMv2_0829_3_89 | 77352 | 78191 | - | 3.A.1.1.20 |
| TC | HRGMv2_0829_3 | HRGMv2_0829_3_90 | 78207 | 79070 | - | 3.A.1.1.25 |
| STP | HRGMv2_0829_3 | HRGMv2_0829_3_91 | 79072 | 81525 | - | SBP_bac_1 |
| pfam | HRGMv2_0829_3 | HRGMv2_0829_3_92 | 81724 | 82887 | - | Methyltransf_25 | Methyltransf_32 | Methyltransf_31 |
| CAZyme | HRGMv2_0829_3 | HRGMv2_0829_3_93 | 83066 | 84118 | - | GT4 |
| CAZyme | HRGMv2_0829_3 | HRGMv2_0829_3_94 | 84141 | 85223 | - | GT4 |
Gene ID: HRGMv2_0829_3_89
Type: TC
Location: 77352 - 78191 (-)
Type: TC
Location: 77352 - 78191 (-)
Gene ID: HRGMv2_0829_3_90
Type: TC
Location: 78207 - 79070 (-)
Type: TC
Location: 78207 - 79070 (-)
Gene ID: HRGMv2_0829_3_91
Type: STP
Location: 79072 - 81525 (-)
Type: STP
Location: 79072 - 81525 (-)
Gene ID: HRGMv2_0829_3_92
Type: pfam
Location: 81724 - 82887 (-)
Type: pfam
Location: 81724 - 82887 (-)
Gene ID: HRGMv2_0829_3_93
Type: CAZyme
Location: 83066 - 84118 (-)
Type: CAZyme
Location: 83066 - 84118 (-)
Gene ID: HRGMv2_0829_3_94
Type: CAZyme
Location: 84141 - 85223 (-)
Type: CAZyme
Location: 84141 - 85223 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp000435835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0829_3_89 | vegan > omnivore | 1.98396 | 0.00224 |
| HRGMv2_0829_3_93 | vegan > omnivore | 4.82684 | 0.00224 |