Cluster: HRGMv2_0829_CGC24
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: HRGMv2_0829
- CGC Family ID: CGCFAM_02074
- Continent: Asia
- Source Study: Ma et al., 2024 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | HRGMv2_0829_10 | HRGMv2_0829_10_91 | 87653 | 88246 | + | 2.A.87.2.3 |
| pfam | HRGMv2_0829_10 | HRGMv2_0829_10_92 | 88486 | 89274 | - | Exo_endo_phos |
| TC | HRGMv2_0829_10 | HRGMv2_0829_10_93 | 89279 | 90940 | - | 4.A.1.1.17 |
| CAZyme | HRGMv2_0829_10 | HRGMv2_0829_10_94 | 91012 | 92673 | - | GH13_31 |
Gene ID: HRGMv2_0829_10_91
Type: TC
Location: 87653 - 88246 (+)
Type: TC
Location: 87653 - 88246 (+)
Gene ID: HRGMv2_0829_10_92
Type: pfam
Location: 88486 - 89274 (-)
Type: pfam
Location: 88486 - 89274 (-)
Gene ID: HRGMv2_0829_10_93
Type: TC
Location: 89279 - 90940 (-)
Type: TC
Location: 89279 - 90940 (-)
Gene ID: HRGMv2_0829_10_94
Type: CAZyme
Location: 91012 - 92673 (-)
Type: CAZyme
Location: 91012 - 92673 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Clostridiales
Family
Clostridiaceae
Genus
Clostridium
Species
Clostridium sp000435835
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| HRGMv2_0829_10_94 | vegan > omnivore | 3.90376 | 0.00224 |
| HRGMv2_0829_10_94 | vegetarian > omnivore | 4.21830 | 0.01926 |