Genome Details
Selected Rep_genome_ID: Rep_618
Total Genomes Found: 9
Total Genomes Found: 9
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes finegoldii
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| B59.bin_6 | 3,351,010 | 100% | 0.48% | China(Inner Mongolia) | Asia | IMGG |
| CGMR033155 | 3,095,025 | 100% | 0% | China | Asia | CGMR |
| HRGMv2_0202 | 3,356,390 | 100% | 0% | South Korea | Asia | HRGM |
| Rep_618 | 3,646,413 | 100% | 0% | NA | NA | WIS |
| SPMP05_bin.24 | 3,159,272 | 97.01% | 0% | Singapore | Asia | SPMP |
| SPMP06_bin.16 | 2,961,293 | 97.6% | 0% | Singapore | Asia | SPMP |
| SPMP40_bin.14 | 2,936,979 | 91.91% | 0.16% | Singapore | Asia | SPMP |
| SPMP48_bin.107 | 3,123,387 | 98.61% | 0% | Singapore | Asia | SPMP |
| SW089_5 | 3,684,829 | 100% | 0% | NA | Africa | H3AfricaPhase2 |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_618_CGC26 | CGCFAM_00016 | Yes | 7 | 3 | host glycan |
| Rep_618_CGC41 | CGCFAM_00016 | Yes | 8 | 2 | host glycan |
| Rep_618_CGC43 | CGCFAM_00111 | Yes | 4 | 1 | alpha-glucan |
| Rep_618_CGC33 | CGCFAM_00113 | Yes | 4 | 1 | |
| Rep_618_CGC35 | CGCFAM_00128 | Yes | 12 | 5 | |
| Rep_618_CGC4 | CGCFAM_00132 | Yes | 5 | 1 | |
| Rep_618_CGC40 | CGCFAM_00156 | Yes | 4 | 1 | |
| Rep_618_CGC27 | CGCFAM_00188 | Yes | 4 | 2 | |
| Rep_618_CGC37 | CGCFAM_00368 | Yes | 4 | 1 | |
| Rep_618_CGC3 | CGCFAM_00475 | Yes | 23 | 3 | |
| Rep_618_CGC23 | CGCFAM_00581 | Yes | 6 | 2 | |
| Rep_618_CGC17 | CGCFAM_00617 | Yes | 6 | 1 | |
| Rep_618_CGC8 | CGCFAM_00632 | Yes | 8 | 2 | |
| Rep_618_CGC6 | CGCFAM_01209 | Yes | 4 | 2 | |
| Rep_618_CGC39 | CGCFAM_01494 | Yes | 9 | 4 | |
| Rep_618_CGC42 | CGCFAM_01682 | Yes | 8 | 1 | |
| Rep_618_CGC30 | CGCFAM_01734 | Yes | 4 | 1 | |
| Rep_618_CGC29 | CGCFAM_02300 | Yes | 13 | 3 | |
| Rep_618_CGC19 | CGCFAM_02581 | Yes | 10 | 4 | |
| Rep_618_CGC16 | CGCFAM_02588 | Yes | 3 | 1 | |
| Rep_618_CGC25 | CGCFAM_03400 | Yes | 15 | 5 | |
| Rep_618_CGC34 | CGCFAM_03588 | Yes | 5 | 1 | |
| Rep_618_CGC9 | CGCFAM_03936 | Yes | 11 | 1 | |
| Rep_618_CGC18 | CGCFAM_04070 | Yes | 3 | 1 | |
| Rep_618_CGC5 | CGCFAM_04754 | Yes | 10 | 3 |
Top CAZyme Families