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Cluster: Rep_618_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_618_c_2 Rep_618_c_2_412 458476 462063 - 1.B.14.6.1
STP Rep_618_c_2 Rep_618_c_2_413 462104 463105 - FecR
TF Rep_618_c_2 Rep_618_c_2_414 463285 463848 - GerE
TC Rep_618_c_2 Rep_618_c_2_415 463895 465283 - 2.A.1.4.6
pfam Rep_618_c_2 Rep_618_c_2_416 467053 468054 - DDE_Tnp_1 | DDE_Tnp_1_3
TC Rep_618_c_2 Rep_618_c_2_417 468590 469093 + 2.A.1.1.41
TC Rep_618_c_2 Rep_618_c_2_418 469483 469917 + 2.A.1.1.106
STP Rep_618_c_2 Rep_618_c_2_419 469919 470779 + PfkB
CAZyme Rep_618_c_2 Rep_618_c_2_420 470805 472391 + GH172
TC Rep_618_c_2 Rep_618_c_2_421 472409 475345 + 1.B.14.6.1
pfam Rep_618_c_2 Rep_618_c_2_422 475357 476955 + SusD_RagB | SusD-like_3
CAZyme Rep_618_c_2 Rep_618_c_2_423 476939 478555 + GH183
CAZyme Rep_618_c_2 Rep_618_c_2_424 478579 480102 + GH183
Gene ID: Rep_618_c_2_412
Type: TC
Location: 458476 - 462063 (-)
Gene ID: Rep_618_c_2_413
Type: STP
Location: 462104 - 463105 (-)
Gene ID: Rep_618_c_2_414
Type: TF
Location: 463285 - 463848 (-)
Gene ID: Rep_618_c_2_415
Type: TC
Location: 463895 - 465283 (-)
Gene ID: Rep_618_c_2_416
Type: pfam
Location: 467053 - 468054 (-)
Gene ID: Rep_618_c_2_417
Type: TC
Location: 468590 - 469093 (+)
Gene ID: Rep_618_c_2_418
Type: TC
Location: 469483 - 469917 (+)
Gene ID: Rep_618_c_2_419
Type: STP
Location: 469919 - 470779 (+)
Gene ID: Rep_618_c_2_420
Type: CAZyme
Location: 470805 - 472391 (+)
Gene ID: Rep_618_c_2_421
Type: TC
Location: 472409 - 475345 (+)
Gene ID: Rep_618_c_2_422
Type: pfam
Location: 475357 - 476955 (+)
Gene ID: Rep_618_c_2_423
Type: CAZyme
Location: 476939 - 478555 (+)
Gene ID: Rep_618_c_2_424
Type: CAZyme
Location: 478579 - 480102 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_618_c_2_412 vegan > omnivore 1.95053 0.00139
Rep_618_c_2_413 vegan > omnivore 2.15277 0.00139
Rep_618_c_2_413 vegetarian > omnivore 1.18453 0.00229
Rep_618_c_2_414 vegan > omnivore 2.22494 0.00139
Rep_618_c_2_414 vegetarian > omnivore 2.39090 0.00229
Rep_618_c_2_415 vegetarian > omnivore 1.55606 0.00229
Rep_618_c_2_415 vegan > omnivore 1.96581 0.00139
Rep_618_c_2_416 vegetarian > vegan 1.34355 0.01953
Rep_618_c_2_417 vegetarian > omnivore 1.04631 0.00229
Rep_618_c_2_417 vegan > omnivore 1.47814 0.00139
Rep_618_c_2_418 vegan > omnivore 1.46191 0.00139
Rep_618_c_2_419 vegan > omnivore 1.81090 0.00139
Rep_618_c_2_419 vegetarian > omnivore 1.21386 0.00229
Rep_618_c_2_420 vegetarian > omnivore 1.25178 0.00229
Rep_618_c_2_420 vegan > omnivore 1.62436 0.00139
Rep_618_c_2_421 vegetarian > omnivore 1.13905 0.00229
Rep_618_c_2_421 vegan > omnivore 1.73414 0.00139
Rep_618_c_2_422 vegetarian > omnivore 1.15390 0.00229
Rep_618_c_2_422 vegan > omnivore 1.71186 0.00139
Rep_618_c_2_423 vegetarian > omnivore 1.08155 0.00229
Rep_618_c_2_423 vegan > omnivore 1.75077 0.00139
Rep_618_c_2_424 vegetarian > omnivore 1.08635 0.00229
Rep_618_c_2_424 vegan > omnivore 1.67981 0.00139

🧭 Explore Read Mapping of CGC

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