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Cluster: Rep_618_CGC41

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_618_c_2 Rep_618_c_2_1241 1396729 1398789 - GH20
pfam Rep_618_c_2 Rep_618_c_2_1242 1399031 1400188 - BT_3987-like_N | Laminin_G_3
CAZyme Rep_618_c_2 Rep_618_c_2_1243 1400219 1402129 - GH18
TC Rep_618_c_2 Rep_618_c_2_1244 1402157 1403767 - 8.A.46.2.2
TC Rep_618_c_2 Rep_618_c_2_1245 1403781 1407146 - 1.B.14.6.13
STP Rep_618_c_2 Rep_618_c_2_1246 1407273 1408274 - FecR
TF Rep_618_c_2 Rep_618_c_2_1247 1408362 1408958 - GerE
TC Rep_618_c_2 Rep_618_c_2_1248 1409731 1411254 + 2.A.1.3.20
Gene ID: Rep_618_c_2_1241
Type: CAZyme
Location: 1396729 - 1398789 (-)
Gene ID: Rep_618_c_2_1242
Type: pfam
Location: 1399031 - 1400188 (-)
Gene ID: Rep_618_c_2_1243
Type: CAZyme
Location: 1400219 - 1402129 (-)
Gene ID: Rep_618_c_2_1244
Type: TC
Location: 1402157 - 1403767 (-)
Gene ID: Rep_618_c_2_1245
Type: TC
Location: 1403781 - 1407146 (-)
Gene ID: Rep_618_c_2_1246
Type: STP
Location: 1407273 - 1408274 (-)
Gene ID: Rep_618_c_2_1247
Type: TF
Location: 1408362 - 1408958 (-)
Gene ID: Rep_618_c_2_1248
Type: TC
Location: 1409731 - 1411254 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_618_c_2_1242 vegetarian > omnivore 1.62671 0.00229
Rep_618_c_2_1242 vegan > omnivore 1.89581 0.00139
Rep_618_c_2_1243 vegan > omnivore 1.18945 0.00139
Rep_618_c_2_1244 vegetarian > omnivore 1.33489 0.00229
Rep_618_c_2_1244 vegan > omnivore 1.90108 0.00139
Rep_618_c_2_1247 vegan > omnivore 1.07305 0.00139

🧭 Explore Read Mapping of CGC

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