Cluster: Rep_618_CGC43
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate: alpha-glucan
- Genome ID: Rep_618
- CGC Family ID: CGCFAM_00111
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_618_c_2 | Rep_618_c_2_1392 | 1582001 | 1583821 | - | GH2 |
| TF | Rep_618_c_2 | Rep_618_c_2_1393 | 1583976 | 1584647 | + | GerE |
| STP | Rep_618_c_2 | Rep_618_c_2_1394 | 1584718 | 1585716 | + | FecR |
| TC | Rep_618_c_2 | Rep_618_c_2_1395 | 1585842 | 1589399 | + | 1.B.14.6.1 |
Gene ID: Rep_618_c_2_1392
Type: CAZyme
Location: 1582001 - 1583821 (-)
Type: CAZyme
Location: 1582001 - 1583821 (-)
Gene ID: Rep_618_c_2_1393
Type: TF
Location: 1583976 - 1584647 (+)
Type: TF
Location: 1583976 - 1584647 (+)
Gene ID: Rep_618_c_2_1394
Type: STP
Location: 1584718 - 1585716 (+)
Type: STP
Location: 1584718 - 1585716 (+)
Gene ID: Rep_618_c_2_1395
Type: TC
Location: 1585842 - 1589399 (+)
Type: TC
Location: 1585842 - 1589399 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes finegoldii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_618_c_2_1393 | vegan > omnivore | 1.86810 | 0.00139 |
| Rep_618_c_2_1393 | vegetarian > omnivore | 2.10326 | 0.00229 |
| Rep_618_c_2_1394 | vegan > omnivore | 1.81836 | 0.00139 |
| Rep_618_c_2_1394 | vegetarian > omnivore | 1.97707 | 0.00229 |
| Rep_618_c_2_1395 | vegan > omnivore | 1.38994 | 0.00139 |
| Rep_618_c_2_1395 | vegetarian > omnivore | 1.55714 | 0.00229 |