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Cluster: Rep_618_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_618_c_0 Rep_618_c_0_295 340217 341641 - CE20
pfam Rep_618_c_0 Rep_618_c_0_296 341638 342831 - BNR_2 | Beta-prop_BT_1020
CAZyme Rep_618_c_0 Rep_618_c_0_297 342828 343979 - GH33
CAZyme Rep_618_c_0 Rep_618_c_0_298 343992 345965 - GH33
pfam Rep_618_c_0 Rep_618_c_0_299 345978 346418 - DUF5017
TC Rep_618_c_0 Rep_618_c_0_300 346412 347974 - 8.A.46.1.3
TC Rep_618_c_0 Rep_618_c_0_301 347986 351123 - 1.B.14.6.1
NULL(UNKNOWN) Rep_618_c_0 Rep_618_c_0_302 351206 353200 - NULL(UNKNOWN)
[View Structural Homologs]
sulfatase Rep_618_c_0 Rep_618_c_0_303 353228 355003 - S1_22
TC Rep_618_c_0 Rep_618_c_0_304 355038 356522 - 2.A.21.3.7
Gene ID: Rep_618_c_0_295
Type: CAZyme
Location: 340217 - 341641 (-)
Gene ID: Rep_618_c_0_296
Type: pfam
Location: 341638 - 342831 (-)
Gene ID: Rep_618_c_0_297
Type: CAZyme
Location: 342828 - 343979 (-)
Gene ID: Rep_618_c_0_298
Type: CAZyme
Location: 343992 - 345965 (-)
Gene ID: Rep_618_c_0_299
Type: pfam
Location: 345978 - 346418 (-)
Gene ID: Rep_618_c_0_300
Type: TC
Location: 346412 - 347974 (-)
Gene ID: Rep_618_c_0_301
Type: TC
Location: 347986 - 351123 (-)
Gene ID: Rep_618_c_0_302
Type:
Location: 351206 - 353200 (-)
Gene ID: Rep_618_c_0_303
Type: sulfatase
Location: 353228 - 355003 (-)
Gene ID: Rep_618_c_0_304
Type: TC
Location: 355038 - 356522 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_618_c_0_296 vegan > omnivore 1.01364 0.00139
Rep_618_c_0_297 vegan > omnivore 1.26822 0.00139
Rep_618_c_0_298 vegan > omnivore 1.13517 0.00139
Rep_618_c_0_299 vegan > omnivore 1.35323 0.00139

🧭 Explore Read Mapping of CGC

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