Cluster: Rep_618_CGC35
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_618
- CGC Family ID: CGCFAM_00128
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_618_c_2 | Rep_618_c_2_857 | 972033 | 974636 | + | GH77 |
| TF | Rep_618_c_2 | Rep_618_c_2_858 | 975009 | 975761 | - | LytTR |
| TC | Rep_618_c_2 | Rep_618_c_2_859 | 975763 | 976731 | - | 8.A.59.2.1 |
| NULL(UNKNOWN) | Rep_618_c_2 | Rep_618_c_2_860 | 976725 | 977150 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_618_c_2 | Rep_618_c_2_861 | 977372 | 978679 | + | 2.A.2.6.2 |
| TC | Rep_618_c_2 | Rep_618_c_2_862 | 978741 | 981782 | + | 1.B.14.6.1 |
| TC | Rep_618_c_2 | Rep_618_c_2_863 | 981779 | 983437 | + | 8.A.46.1.1 |
| pfam | Rep_618_c_2 | Rep_618_c_2_864 | 983461 | 985275 | + | SusE | SusF_SusE |
| CAZyme | Rep_618_c_2 | Rep_618_c_2_865 | 985383 | 987701 | + | GH13_36 |
| CAZyme | Rep_618_c_2 | Rep_618_c_2_866 | 987712 | 989049 | + | GH13 |
| CAZyme | Rep_618_c_2 | Rep_618_c_2_867 | 989258 | 991135 | + | GH13_46 |
| CAZyme | Rep_618_c_2 | Rep_618_c_2_868 | 991148 | 993343 | + | GH97 |
Gene ID: Rep_618_c_2_857
Type: CAZyme
Location: 972033 - 974636 (+)
Type: CAZyme
Location: 972033 - 974636 (+)
Gene ID: Rep_618_c_2_858
Type: TF
Location: 975009 - 975761 (-)
Type: TF
Location: 975009 - 975761 (-)
Gene ID: Rep_618_c_2_859
Type: TC
Location: 975763 - 976731 (-)
Type: TC
Location: 975763 - 976731 (-)
Gene ID: Rep_618_c_2_860
Type:
Location: 976725 - 977150 (-)
Type:
Location: 976725 - 977150 (-)
Gene ID: Rep_618_c_2_861
Type: TC
Location: 977372 - 978679 (+)
Type: TC
Location: 977372 - 978679 (+)
Gene ID: Rep_618_c_2_862
Type: TC
Location: 978741 - 981782 (+)
Type: TC
Location: 978741 - 981782 (+)
Gene ID: Rep_618_c_2_863
Type: TC
Location: 981779 - 983437 (+)
Type: TC
Location: 981779 - 983437 (+)
Gene ID: Rep_618_c_2_864
Type: pfam
Location: 983461 - 985275 (+)
Type: pfam
Location: 983461 - 985275 (+)
Gene ID: Rep_618_c_2_865
Type: CAZyme
Location: 985383 - 987701 (+)
Type: CAZyme
Location: 985383 - 987701 (+)
Gene ID: Rep_618_c_2_866
Type: CAZyme
Location: 987712 - 989049 (+)
Type: CAZyme
Location: 987712 - 989049 (+)
Gene ID: Rep_618_c_2_867
Type: CAZyme
Location: 989258 - 991135 (+)
Type: CAZyme
Location: 989258 - 991135 (+)
Gene ID: Rep_618_c_2_868
Type: CAZyme
Location: 991148 - 993343 (+)
Type: CAZyme
Location: 991148 - 993343 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes finegoldii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_618_c_2_860 | vegetarian > vegan | 1.00372 | 0.00155 |