Cluster: Rep_618_CGC26
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate: host glycan
- Genome ID: Rep_618
- CGC Family ID: CGCFAM_00016
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_618_c_2 | Rep_618_c_2_219 | 241560 | 242495 | - | GH18 |
| CAZyme | Rep_618_c_2 | Rep_618_c_2_220 | 242591 | 243526 | - | GH18 |
| CAZyme | Rep_618_c_2 | Rep_618_c_2_221 | 243589 | 245118 | - | GH18 |
| pfam | Rep_618_c_2 | Rep_618_c_2_222 | 245136 | 246401 | - | BT_3987-like_N | Laminin_G_3 | DUF4973 |
| pfam | Rep_618_c_2 | Rep_618_c_2_223 | 246410 | 247327 | - | GH18_BT1044-like |
| TC | Rep_618_c_2 | Rep_618_c_2_224 | 247337 | 248917 | - | 8.A.46.2.2 |
| TC | Rep_618_c_2 | Rep_618_c_2_225 | 248923 | 252261 | - | 1.B.14.6.13 |
Gene ID: Rep_618_c_2_219
Type: CAZyme
Location: 241560 - 242495 (-)
Type: CAZyme
Location: 241560 - 242495 (-)
Gene ID: Rep_618_c_2_220
Type: CAZyme
Location: 242591 - 243526 (-)
Type: CAZyme
Location: 242591 - 243526 (-)
Gene ID: Rep_618_c_2_221
Type: CAZyme
Location: 243589 - 245118 (-)
Type: CAZyme
Location: 243589 - 245118 (-)
Gene ID: Rep_618_c_2_222
Type: pfam
Location: 245136 - 246401 (-)
Type: pfam
Location: 245136 - 246401 (-)
Gene ID: Rep_618_c_2_223
Type: pfam
Location: 246410 - 247327 (-)
Type: pfam
Location: 246410 - 247327 (-)
Gene ID: Rep_618_c_2_224
Type: TC
Location: 247337 - 248917 (-)
Type: TC
Location: 247337 - 248917 (-)
Gene ID: Rep_618_c_2_225
Type: TC
Location: 248923 - 252261 (-)
Type: TC
Location: 248923 - 252261 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes finegoldii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.