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Cluster: Rep_618_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_618_c_0 Rep_618_c_0_403 498675 500717 + GH29
peptidase Rep_618_c_0 Rep_618_c_0_404 500919 501587 + M15.UPD
TC Rep_618_c_0 Rep_618_c_0_405 501711 503132 - 1.I.1.1.3
pfam Rep_618_c_0 Rep_618_c_0_406 503322 504797 + tRNA-synt_1e | DALR_2 | tRNA-synt_1g | CysS_C
TC Rep_618_c_0 Rep_618_c_0_407 504995 506401 + 2.A.66.1.32
TC Rep_618_c_0 Rep_618_c_0_408 506411 507046 + 2.A.115.2.14
pfam Rep_618_c_0 Rep_618_c_0_409 507078 508190 + RF-1 | PCRF
CAZyme Rep_618_c_0 Rep_618_c_0_410 508232 509569 + GH171
Gene ID: Rep_618_c_0_403
Type: CAZyme
Location: 498675 - 500717 (+)
Gene ID: Rep_618_c_0_404
Type: peptidase
Location: 500919 - 501587 (+)
Gene ID: Rep_618_c_0_405
Type: TC
Location: 501711 - 503132 (-)
Gene ID: Rep_618_c_0_406
Type: pfam
Location: 503322 - 504797 (+)
Gene ID: Rep_618_c_0_407
Type: TC
Location: 504995 - 506401 (+)
Gene ID: Rep_618_c_0_408
Type: TC
Location: 506411 - 507046 (+)
Gene ID: Rep_618_c_0_409
Type: pfam
Location: 507078 - 508190 (+)
Gene ID: Rep_618_c_0_410
Type: CAZyme
Location: 508232 - 509569 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_618_c_0_403 vegan > omnivore 1.83982 0.00139
Rep_618_c_0_403 vegetarian > omnivore 1.40997 0.00229
Rep_618_c_0_404 vegan > omnivore 1.40229 0.00139
Rep_618_c_0_404 vegetarian > omnivore 1.29894 0.00229

🧭 Explore Read Mapping of CGC

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