Cluster: Rep_618_CGC39
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_618
- CGC Family ID: CGCFAM_01494
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_618_c_2 | Rep_618_c_2_1134 | 1263838 | 1265043 | - | GH26 |
| TF | Rep_618_c_2 | Rep_618_c_2_1135 | 1265068 | 1265961 | - | HTH_AraC |
| TC | Rep_618_c_2 | Rep_618_c_2_1136 | 1265971 | 1267308 | - | 2.A.2.3.5 |
| CAZyme | Rep_618_c_2 | Rep_618_c_2_1137 | 1267312 | 1269318 | - | GH97 |
| NULL(UNKNOWN) | Rep_618_c_2 | Rep_618_c_2_1138 | 1269315 | 1269488 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_618_c_2 | Rep_618_c_2_1139 | 1269691 | 1271256 | + | SusE |
| CAZyme | Rep_618_c_2 | Rep_618_c_2_1140 | 1271259 | 1273829 | + | GH2 |
| CAZyme | Rep_618_c_2 | Rep_618_c_2_1141 | 1273849 | 1275210 | + | GH37 |
| TC | Rep_618_c_2 | Rep_618_c_2_1142 | 1275207 | 1278284 | + | 1.B.14.6.1 |
Gene ID: Rep_618_c_2_1134
Type: CAZyme
Location: 1263838 - 1265043 (-)
Type: CAZyme
Location: 1263838 - 1265043 (-)
Gene ID: Rep_618_c_2_1135
Type: TF
Location: 1265068 - 1265961 (-)
Type: TF
Location: 1265068 - 1265961 (-)
Gene ID: Rep_618_c_2_1136
Type: TC
Location: 1265971 - 1267308 (-)
Type: TC
Location: 1265971 - 1267308 (-)
Gene ID: Rep_618_c_2_1137
Type: CAZyme
Location: 1267312 - 1269318 (-)
Type: CAZyme
Location: 1267312 - 1269318 (-)
Gene ID: Rep_618_c_2_1138
Type:
Location: 1269315 - 1269488 (-)
Type:
Location: 1269315 - 1269488 (-)
Gene ID: Rep_618_c_2_1139
Type: pfam
Location: 1269691 - 1271256 (+)
Type: pfam
Location: 1269691 - 1271256 (+)
Gene ID: Rep_618_c_2_1140
Type: CAZyme
Location: 1271259 - 1273829 (+)
Type: CAZyme
Location: 1271259 - 1273829 (+)
Gene ID: Rep_618_c_2_1141
Type: CAZyme
Location: 1273849 - 1275210 (+)
Type: CAZyme
Location: 1273849 - 1275210 (+)
Gene ID: Rep_618_c_2_1142
Type: TC
Location: 1275207 - 1278284 (+)
Type: TC
Location: 1275207 - 1278284 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes finegoldii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_618_c_2_1134 | vegan > omnivore | 1.76815 | 0.00139 |
| Rep_618_c_2_1134 | vegetarian > omnivore | 2.14569 | 0.00229 |
| Rep_618_c_2_1135 | vegan > omnivore | 2.02872 | 0.00139 |
| Rep_618_c_2_1135 | vegetarian > omnivore | 2.18788 | 0.00229 |
| Rep_618_c_2_1136 | vegetarian > omnivore | 1.98752 | 0.00229 |
| Rep_618_c_2_1136 | vegan > omnivore | 1.66377 | 0.00139 |
| Rep_618_c_2_1137 | vegetarian > omnivore | 2.12688 | 0.00229 |
| Rep_618_c_2_1137 | vegan > omnivore | 1.74962 | 0.00139 |
| Rep_618_c_2_1138 | vegetarian > omnivore | 2.17600 | 0.00229 |
| Rep_618_c_2_1138 | vegan > omnivore | 2.20797 | 0.00139 |
| Rep_618_c_2_1139 | vegan > omnivore | 1.89991 | 0.00139 |
| Rep_618_c_2_1139 | vegetarian > omnivore | 2.32643 | 0.00229 |
| Rep_618_c_2_1140 | vegetarian > omnivore | 1.96266 | 0.00229 |
| Rep_618_c_2_1140 | vegan > omnivore | 1.80032 | 0.00139 |
| Rep_618_c_2_1141 | vegetarian > omnivore | 2.19389 | 0.00229 |
| Rep_618_c_2_1141 | vegan > omnivore | 1.98236 | 0.00139 |
| Rep_618_c_2_1142 | vegetarian > omnivore | 1.99033 | 0.00229 |
| Rep_618_c_2_1142 | vegan > omnivore | 1.77045 | 0.00139 |