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Cluster: Rep_618_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_618_c_1 Rep_618_c_1_129 155535 157838 + GH20
STP Rep_618_c_1 Rep_618_c_1_130 157853 158464 + Sigma70_r2 | Sigma70_r4_2
STP Rep_618_c_1 Rep_618_c_1_131 158510 159541 + FecR
TC Rep_618_c_1 Rep_618_c_1_132 159718 163014 + 1.B.14.6.13
TC Rep_618_c_1 Rep_618_c_1_133 163028 164554 + 8.A.46.2.1
CAZyme Rep_618_c_1 Rep_618_c_1_134 164583 165704 + GH18
Gene ID: Rep_618_c_1_129
Type: CAZyme
Location: 155535 - 157838 (+)
Gene ID: Rep_618_c_1_130
Type: STP
Location: 157853 - 158464 (+)
Gene ID: Rep_618_c_1_131
Type: STP
Location: 158510 - 159541 (+)
Gene ID: Rep_618_c_1_132
Type: TC
Location: 159718 - 163014 (+)
Gene ID: Rep_618_c_1_133
Type: TC
Location: 163028 - 164554 (+)
Gene ID: Rep_618_c_1_134
Type: CAZyme
Location: 164583 - 165704 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_618_c_1_130 vegan > omnivore 1.77623 0.00139
Rep_618_c_1_130 vegetarian > omnivore 1.41984 0.00229
Rep_618_c_1_131 vegan > omnivore 1.58201 0.00139
Rep_618_c_1_131 vegetarian > omnivore 1.22171 0.00229
Rep_618_c_1_132 vegan > omnivore 1.32763 0.00139
Rep_618_c_1_133 vegan > omnivore 1.44198 0.00139
Rep_618_c_1_133 vegetarian > omnivore 1.03796 0.00229
Rep_618_c_1_134 vegetarian > omnivore 1.27354 0.00229
Rep_618_c_1_134 vegan > omnivore 1.83529 0.00139

🧭 Explore Read Mapping of CGC

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