Cluster: Rep_618_CGC25
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_618
- CGC Family ID: CGCFAM_03400
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_618_c_2 | Rep_618_c_2_106 | 118803 | 119816 | - | GT27 |
| pfam | Rep_618_c_2 | Rep_618_c_2_107 | 119803 | 120723 | - | Lip_A_acyltrans |
| TC | Rep_618_c_2 | Rep_618_c_2_108 | 120735 | 122114 | - | 9.B.145.1.2 |
| pfam | Rep_618_c_2 | Rep_618_c_2_109 | 122137 | 122844 | - | TP_methylase |
| NULL(UNKNOWN) | Rep_618_c_2 | Rep_618_c_2_110 | 122849 | 124843 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_618_c_2 | Rep_618_c_2_111 | 124999 | 126642 | - | GH20 |
| sulfatase | Rep_618_c_2 | Rep_618_c_2_112 | 126725 | 127546 | - | S1_7 |
| pfam | Rep_618_c_2 | Rep_618_c_2_113 | 127557 | 128540 | - | Metallophos |
| CAZyme | Rep_618_c_2 | Rep_618_c_2_114 | 128578 | 130191 | - | GH63 |
| pfam | Rep_618_c_2 | Rep_618_c_2_115 | 130202 | 132133 | - | Alk_phosphatase | Metalloenzyme |
| pfam | Rep_618_c_2 | Rep_618_c_2_116 | 132142 | 132981 | - | Exo_endo_phos |
| CAZyme | Rep_618_c_2 | Rep_618_c_2_117 | 133018 | 135909 | - | GH92 |
| STP | Rep_618_c_2 | Rep_618_c_2_118 | 136215 | 136991 | + | Peripla_BP_3 |
| TF | Rep_618_c_2 | Rep_618_c_2_119 | 136954 | 137394 | + | HTH_AraC | HTH_AraC |
| CAZyme | Rep_618_c_2 | Rep_618_c_2_120 | 137583 | 140057 | - | GH3 |
Gene ID: Rep_618_c_2_106
Type: CAZyme
Location: 118803 - 119816 (-)
Type: CAZyme
Location: 118803 - 119816 (-)
Gene ID: Rep_618_c_2_107
Type: pfam
Location: 119803 - 120723 (-)
Type: pfam
Location: 119803 - 120723 (-)
Gene ID: Rep_618_c_2_108
Type: TC
Location: 120735 - 122114 (-)
Type: TC
Location: 120735 - 122114 (-)
Gene ID: Rep_618_c_2_109
Type: pfam
Location: 122137 - 122844 (-)
Type: pfam
Location: 122137 - 122844 (-)
Gene ID: Rep_618_c_2_110
Type:
Location: 122849 - 124843 (-)
Type:
Location: 122849 - 124843 (-)
Gene ID: Rep_618_c_2_111
Type: CAZyme
Location: 124999 - 126642 (-)
Type: CAZyme
Location: 124999 - 126642 (-)
Gene ID: Rep_618_c_2_112
Type: sulfatase
Location: 126725 - 127546 (-)
Type: sulfatase
Location: 126725 - 127546 (-)
Gene ID: Rep_618_c_2_113
Type: pfam
Location: 127557 - 128540 (-)
Type: pfam
Location: 127557 - 128540 (-)
Gene ID: Rep_618_c_2_114
Type: CAZyme
Location: 128578 - 130191 (-)
Type: CAZyme
Location: 128578 - 130191 (-)
Gene ID: Rep_618_c_2_115
Type: pfam
Location: 130202 - 132133 (-)
Type: pfam
Location: 130202 - 132133 (-)
Gene ID: Rep_618_c_2_116
Type: pfam
Location: 132142 - 132981 (-)
Type: pfam
Location: 132142 - 132981 (-)
Gene ID: Rep_618_c_2_117
Type: CAZyme
Location: 133018 - 135909 (-)
Type: CAZyme
Location: 133018 - 135909 (-)
Gene ID: Rep_618_c_2_118
Type: STP
Location: 136215 - 136991 (+)
Type: STP
Location: 136215 - 136991 (+)
Gene ID: Rep_618_c_2_119
Type: TF
Location: 136954 - 137394 (+)
Type: TF
Location: 136954 - 137394 (+)
Gene ID: Rep_618_c_2_120
Type: CAZyme
Location: 137583 - 140057 (-)
Type: CAZyme
Location: 137583 - 140057 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes finegoldii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_618_c_2_120 | vegan > omnivore | 1.57636 | 0.00139 |
| Rep_618_c_2_120 | vegetarian > omnivore | 1.22721 | 0.00229 |