Cluster: Rep_618_CGC3
🧬 Cluster Details
- Gene Count: 23
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_618
- CGC Family ID: CGCFAM_00475
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_618_c_0 | Rep_618_c_0_77 | 93693 | 97100 | + | 1.B.14.6.13 |
| TC | Rep_618_c_0 | Rep_618_c_0_78 | 97116 | 98705 | + | 8.A.46.2.2 |
| pfam | Rep_618_c_0 | Rep_618_c_0_79 | 98725 | 99774 | + | GH18_BT1044-like |
| pfam | Rep_618_c_0 | Rep_618_c_0_80 | 99787 | 100962 | + | BT_3987-like_N | Laminin_G_3 |
| CAZyme | Rep_618_c_0 | Rep_618_c_0_81 | 100982 | 102499 | + | GH18 |
| pfam | Rep_618_c_0 | Rep_618_c_0_82 | 102569 | 103933 | + | F5_F8_type_C | DUF4989 |
| NULL(UNKNOWN) | Rep_618_c_0 | Rep_618_c_0_83 | 104153 | 104518 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_618_c_0 | Rep_618_c_0_84 | 104630 | 104980 | + | 3.D.1.8.1 |
| TC | Rep_618_c_0 | Rep_618_c_0_85 | 104971 | 105627 | + | 3.D.1.3.1 |
| TC | Rep_618_c_0 | Rep_618_c_0_86 | 105630 | 107243 | + | 3.D.1.5.1 |
| TC | Rep_618_c_0 | Rep_618_c_0_87 | 107423 | 108499 | + | 3.D.1.5.1 |
| STP | Rep_618_c_0 | Rep_618_c_0_88 | 108502 | 108942 | + | Fer4 | Fer4 |
| TC | Rep_618_c_0 | Rep_618_c_0_89 | 108946 | 109455 | + | 3.D.9.1.1 |
| TC | Rep_618_c_0 | Rep_618_c_0_90 | 109468 | 109776 | + | 3.D.1.2.1 |
| TC | Rep_618_c_0 | Rep_618_c_0_91 | 109799 | 111691 | + | 3.D.9.1.1 |
| TC | Rep_618_c_0 | Rep_618_c_0_92 | 111704 | 113188 | + | 3.D.1.2.1 |
| TC | Rep_618_c_0 | Rep_618_c_0_93 | 113195 | 114622 | + | 3.D.1.2.1 |
| pfam | Rep_618_c_0 | Rep_618_c_0_94 | 114799 | 115296 | - | DNA_binding_1 | Methyltransf_1N |
| TC | Rep_618_c_0 | Rep_618_c_0_95 | 115308 | 117443 | - | 8.A.51.1.1 |
| NULL(UNKNOWN) | Rep_618_c_0 | Rep_618_c_0_96 | 117457 | 118143 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_618_c_0 | Rep_618_c_0_97 | 118159 | 119166 | - | GH73 |
| pfam | Rep_618_c_0 | Rep_618_c_0_98 | 119242 | 119847 | + | DUF4254 |
| CAZyme | Rep_618_c_0 | Rep_618_c_0_99 | 119831 | 120856 | + | GT9 |
Gene ID: Rep_618_c_0_77
Type: TC
Location: 93693 - 97100 (+)
Type: TC
Location: 93693 - 97100 (+)
Gene ID: Rep_618_c_0_78
Type: TC
Location: 97116 - 98705 (+)
Type: TC
Location: 97116 - 98705 (+)
Gene ID: Rep_618_c_0_79
Type: pfam
Location: 98725 - 99774 (+)
Type: pfam
Location: 98725 - 99774 (+)
Gene ID: Rep_618_c_0_80
Type: pfam
Location: 99787 - 100962 (+)
Type: pfam
Location: 99787 - 100962 (+)
Gene ID: Rep_618_c_0_81
Type: CAZyme
Location: 100982 - 102499 (+)
Type: CAZyme
Location: 100982 - 102499 (+)
Gene ID: Rep_618_c_0_82
Type: pfam
Location: 102569 - 103933 (+)
Type: pfam
Location: 102569 - 103933 (+)
Gene ID: Rep_618_c_0_83
Type:
Location: 104153 - 104518 (+)
Type:
Location: 104153 - 104518 (+)
Gene ID: Rep_618_c_0_84
Type: TC
Location: 104630 - 104980 (+)
Type: TC
Location: 104630 - 104980 (+)
Gene ID: Rep_618_c_0_85
Type: TC
Location: 104971 - 105627 (+)
Type: TC
Location: 104971 - 105627 (+)
Gene ID: Rep_618_c_0_86
Type: TC
Location: 105630 - 107243 (+)
Type: TC
Location: 105630 - 107243 (+)
Gene ID: Rep_618_c_0_87
Type: TC
Location: 107423 - 108499 (+)
Type: TC
Location: 107423 - 108499 (+)
Gene ID: Rep_618_c_0_88
Type: STP
Location: 108502 - 108942 (+)
Type: STP
Location: 108502 - 108942 (+)
Gene ID: Rep_618_c_0_89
Type: TC
Location: 108946 - 109455 (+)
Type: TC
Location: 108946 - 109455 (+)
Gene ID: Rep_618_c_0_90
Type: TC
Location: 109468 - 109776 (+)
Type: TC
Location: 109468 - 109776 (+)
Gene ID: Rep_618_c_0_91
Type: TC
Location: 109799 - 111691 (+)
Type: TC
Location: 109799 - 111691 (+)
Gene ID: Rep_618_c_0_92
Type: TC
Location: 111704 - 113188 (+)
Type: TC
Location: 111704 - 113188 (+)
Gene ID: Rep_618_c_0_93
Type: TC
Location: 113195 - 114622 (+)
Type: TC
Location: 113195 - 114622 (+)
Gene ID: Rep_618_c_0_94
Type: pfam
Location: 114799 - 115296 (-)
Type: pfam
Location: 114799 - 115296 (-)
Gene ID: Rep_618_c_0_95
Type: TC
Location: 115308 - 117443 (-)
Type: TC
Location: 115308 - 117443 (-)
Gene ID: Rep_618_c_0_96
Type:
Location: 117457 - 118143 (-)
Type:
Location: 117457 - 118143 (-)
Gene ID: Rep_618_c_0_97
Type: CAZyme
Location: 118159 - 119166 (-)
Type: CAZyme
Location: 118159 - 119166 (-)
Gene ID: Rep_618_c_0_98
Type: pfam
Location: 119242 - 119847 (+)
Type: pfam
Location: 119242 - 119847 (+)
Gene ID: Rep_618_c_0_99
Type: CAZyme
Location: 119831 - 120856 (+)
Type: CAZyme
Location: 119831 - 120856 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Rikenellaceae
Genus
Alistipes
Species
Alistipes finegoldii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_618_c_0_78 | vegan > omnivore | 1.88770 | 0.00139 |
| Rep_618_c_0_78 | vegetarian > omnivore | 1.26967 | 0.00229 |
| Rep_618_c_0_79 | vegan > omnivore | 1.89978 | 0.00139 |
| Rep_618_c_0_79 | vegetarian > omnivore | 1.29466 | 0.00229 |
| Rep_618_c_0_80 | vegetarian > omnivore | 1.25346 | 0.00229 |
| Rep_618_c_0_80 | vegan > omnivore | 1.89160 | 0.00139 |
| Rep_618_c_0_81 | vegetarian > omnivore | 1.44387 | 0.00229 |
| Rep_618_c_0_81 | vegan > omnivore | 1.87710 | 0.00139 |
| Rep_618_c_0_82 | vegetarian > omnivore | 1.60611 | 0.00229 |
| Rep_618_c_0_82 | vegan > omnivore | 2.30446 | 0.00139 |
| Rep_618_c_0_83 | vegan > omnivore | 2.18167 | 0.00139 |
| Rep_618_c_0_83 | vegetarian > omnivore | 1.41975 | 0.00229 |
| Rep_618_c_0_94 | vegan > omnivore | 1.50396 | 0.00139 |
| Rep_618_c_0_94 | vegetarian > omnivore | 1.67093 | 0.00229 |