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Cluster: Rep_618_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_618_c_0 Rep_618_c_0_926 1120914 1121279 - 2.A.7.34.6
pfam Rep_618_c_0 Rep_618_c_0_927 1121575 1122234 - Hydrolase | HAD | Hydrolase_like | HAD_2
TC Rep_618_c_0 Rep_618_c_0_928 1122294 1124807 - 1.B.14.6.14
pfam Rep_618_c_0 Rep_618_c_0_929 1124897 1125388 + tRNA_edit
CAZyme Rep_618_c_0 Rep_618_c_0_930 1125398 1126498 - GT4
pfam Rep_618_c_0 Rep_618_c_0_931 1126539 1127609 - Radical_SAM | SPASM
CAZyme Rep_618_c_0 Rep_618_c_0_932 1127611 1128792 - GT4
pfam Rep_618_c_0 Rep_618_c_0_933 1128860 1129834 - Acyl_transf_3
CAZyme Rep_618_c_0 Rep_618_c_0_934 1129841 1130959 - GT4
CAZyme Rep_618_c_0 Rep_618_c_0_935 1131021 1131953 - GT2
Gene ID: Rep_618_c_0_926
Type: TC
Location: 1120914 - 1121279 (-)
Gene ID: Rep_618_c_0_927
Type: pfam
Location: 1121575 - 1122234 (-)
Gene ID: Rep_618_c_0_928
Type: TC
Location: 1122294 - 1124807 (-)
Gene ID: Rep_618_c_0_929
Type: pfam
Location: 1124897 - 1125388 (+)
Gene ID: Rep_618_c_0_930
Type: CAZyme
Location: 1125398 - 1126498 (-)
Gene ID: Rep_618_c_0_931
Type: pfam
Location: 1126539 - 1127609 (-)
Gene ID: Rep_618_c_0_932
Type: CAZyme
Location: 1127611 - 1128792 (-)
Gene ID: Rep_618_c_0_933
Type: pfam
Location: 1128860 - 1129834 (-)
Gene ID: Rep_618_c_0_934
Type: CAZyme
Location: 1129841 - 1130959 (-)
Gene ID: Rep_618_c_0_935
Type: CAZyme
Location: 1131021 - 1131953 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_618_c_0_930 vegan > omnivore 1.77656 0.00139
Rep_618_c_0_932 vegan > omnivore 1.14729 0.00139

🧭 Explore Read Mapping of CGC

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