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Genome Details

Selected Rep_genome_ID: Rep_506
Total Genomes Found: 1
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→
Species
Phocaeicola merdavium
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
Rep_506 2,887,944 92.5499% 1.1985% NA NA WIS
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
Rep_506_CGC25 CGCFAM_00003 Yes 5 1
Rep_506_CGC3 CGCFAM_00016 Yes 11 5 host glycan
Rep_506_CGC8 CGCFAM_00023 Yes 6 2
Rep_506_CGC26 CGCFAM_00025 Yes 9 3 pectin/alpha-glucan
Rep_506_CGC27 CGCFAM_00034 Yes 5 3
Rep_506_CGC17 CGCFAM_00101 Yes 11 6 beta-glucan
Rep_506_CGC14 CGCFAM_00116 Yes 8 3 xylan/beta-glucan
Rep_506_CGC7 CGCFAM_00225 Yes 7 4 arabinogalactan
Rep_506_CGC24 CGCFAM_00229 Yes 7 1
Rep_506_CGC39 CGCFAM_00234 Yes 5 2
Rep_506_CGC32 CGCFAM_00320 Yes 8 2
Rep_506_CGC33 CGCFAM_00352 Yes 6 1
Rep_506_CGC16 CGCFAM_01122 Yes 6 3
Rep_506_CGC35 CGCFAM_01306 Yes 5 1
Rep_506_CGC37 CGCFAM_01615 Yes 6 1
Rep_506_CGC12 CGCFAM_01914 Yes 6 1
Rep_506_CGC29 CGCFAM_02298 Yes 12 6
Rep_506_CGC30 CGCFAM_02320 Yes 8 2
Rep_506_CGC13 CGCFAM_02624 Yes 9 2
Rep_506_CGC31 CGCFAM_02810 Yes 7 2
Rep_506_CGC23 CGCFAM_02994 Yes 9 7
Rep_506_CGC1 CGCFAM_03618 Yes 4 2
Rep_506_CGC21 CGCFAM_04402 Yes 17 7
Rep_506_CGC22 CGCFAM_06683 Yes 3 1
Rep_506_CGC34 CGCFAM_09476 Yes 8 1
Top CAZyme Families