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Cluster: Rep_506_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_506_c_8 Rep_506_c_8_16 17383 20508 + 1.B.14.6.1
TC Rep_506_c_8 Rep_506_c_8_17 20532 22064 + 8.A.46.1.3
TC Rep_506_c_8 Rep_506_c_8_18 22107 22385 + 2.A.124.1.2
TC Rep_506_c_8 Rep_506_c_8_19 22382 22984 + 2.A.124.1.2
CAZyme Rep_506_c_8 Rep_506_c_8_20 23005 26160 + GH2
CAZyme Rep_506_c_8 Rep_506_c_8_21 26200 28116 + GH63
STP Rep_506_c_8 Rep_506_c_8_22 28187 29401 - Aminotran_1_2
pfam Rep_506_c_8 Rep_506_c_8_23 29410 30759 - SUFBD_core | SufBD_N
TC Rep_506_c_8 Rep_506_c_8_24 30756 31508 - 3.A.1.5.3
Gene ID: Rep_506_c_8_16
Type: TC
Location: 17383 - 20508 (+)
Gene ID: Rep_506_c_8_17
Type: TC
Location: 20532 - 22064 (+)
Gene ID: Rep_506_c_8_18
Type: TC
Location: 22107 - 22385 (+)
Gene ID: Rep_506_c_8_19
Type: TC
Location: 22382 - 22984 (+)
Gene ID: Rep_506_c_8_20
Type: CAZyme
Location: 23005 - 26160 (+)
Gene ID: Rep_506_c_8_21
Type: CAZyme
Location: 26200 - 28116 (+)
Gene ID: Rep_506_c_8_22
Type: STP
Location: 28187 - 29401 (-)
Gene ID: Rep_506_c_8_23
Type: pfam
Location: 29410 - 30759 (-)
Gene ID: Rep_506_c_8_24
Type: TC
Location: 30756 - 31508 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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