Cluster: Rep_506_CGC24
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_506
- CGC Family ID: CGCFAM_00229
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_506_c_26 | Rep_506_c_26_25 | 26361 | 28352 | - | 2.A.67.4.2 |
| NULL(UNKNOWN) | Rep_506_c_26 | Rep_506_c_26_26 | 28488 | 28730 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_506_c_26 | Rep_506_c_26_27 | 28915 | 29928 | - | ApbE |
| TC | Rep_506_c_26 | Rep_506_c_26_28 | 30089 | 30658 | - | 2.A.107.1.2 |
| pfam | Rep_506_c_26 | Rep_506_c_26_29 | 30662 | 31375 | - | DUF6048 |
| pfam | Rep_506_c_26 | Rep_506_c_26_30 | 31323 | 31835 | - | DUF6452 |
| CAZyme | Rep_506_c_26 | Rep_506_c_26_31 | 31838 | 32788 | - | GT2 |
Gene ID: Rep_506_c_26_25
Type: TC
Location: 26361 - 28352 (-)
Type: TC
Location: 26361 - 28352 (-)
Gene ID: Rep_506_c_26_26
Type:
Location: 28488 - 28730 (-)
Type:
Location: 28488 - 28730 (-)
Gene ID: Rep_506_c_26_27
Type: pfam
Location: 28915 - 29928 (-)
Type: pfam
Location: 28915 - 29928 (-)
Gene ID: Rep_506_c_26_28
Type: TC
Location: 30089 - 30658 (-)
Type: TC
Location: 30089 - 30658 (-)
Gene ID: Rep_506_c_26_29
Type: pfam
Location: 30662 - 31375 (-)
Type: pfam
Location: 30662 - 31375 (-)
Gene ID: Rep_506_c_26_30
Type: pfam
Location: 31323 - 31835 (-)
Type: pfam
Location: 31323 - 31835 (-)
Gene ID: Rep_506_c_26_31
Type: CAZyme
Location: 31838 - 32788 (-)
Type: CAZyme
Location: 31838 - 32788 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.