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Cluster: Rep_506_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_506_c_39 Rep_506_c_39_2 1283 4579 + 1.B.14.6.1
pfam Rep_506_c_39 Rep_506_c_39_3 4595 6376 + SusD_RagB | SusD-like_3
CAZyme Rep_506_c_39 Rep_506_c_39_4 6478 7845 + GH27
NULL(UNKNOWN) Rep_506_c_39 Rep_506_c_39_5 8018 8158 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_506_c_39 Rep_506_c_39_6 8284 11517 + 1.B.14.6.2
pfam Rep_506_c_39 Rep_506_c_39_7 11531 13252 + SusD-like_3
NULL(UNKNOWN) Rep_506_c_39 Rep_506_c_39_8 13282 14160 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_506_c_39 Rep_506_c_39_9 14384 15925 + GH28
Gene ID: Rep_506_c_39_2
Type: TC
Location: 1283 - 4579 (+)
Gene ID: Rep_506_c_39_3
Type: pfam
Location: 4595 - 6376 (+)
Gene ID: Rep_506_c_39_4
Type: CAZyme
Location: 6478 - 7845 (+)
Gene ID: Rep_506_c_39_5
Type:
Location: 8018 - 8158 (-)
Gene ID: Rep_506_c_39_6
Type: TC
Location: 8284 - 11517 (+)
Gene ID: Rep_506_c_39_7
Type: pfam
Location: 11531 - 13252 (+)
Gene ID: Rep_506_c_39_8
Type:
Location: 13282 - 14160 (+)
Gene ID: Rep_506_c_39_9
Type: CAZyme
Location: 14384 - 15925 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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