Cluster: Rep_506_CGC21
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 7
- Substrate:
- Genome ID: Rep_506
- CGC Family ID: CGCFAM_04402
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_506_c_19 | Rep_506_c_19_12 | 11481 | 11912 | - | 1.A.22.1.1 |
| pfam | Rep_506_c_19 | Rep_506_c_19_13 | 12141 | 13505 | + | TonB_C | CarboxypepD_reg | CarbopepD_reg_2 |
| NULL(UNKNOWN) | Rep_506_c_19 | Rep_506_c_19_14 | 13436 | 13705 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_506_c_19 | Rep_506_c_19_15 | 13750 | 15351 | + | PL1_2 |
| CAZyme | Rep_506_c_19 | Rep_506_c_19_16 | 15365 | 16822 | + | PL1_2 |
| CAZyme | Rep_506_c_19 | Rep_506_c_19_17 | 16860 | 19055 | + | CE19 | PL10_1 |
| CAZyme | Rep_506_c_19 | Rep_506_c_19_18 | 19065 | 20789 | + | CE12 | CE8 |
| pfam | Rep_506_c_19 | Rep_506_c_19_19 | 20873 | 22537 | - | DUF5123 |
| TC | Rep_506_c_19 | Rep_506_c_19_20 | 22561 | 24516 | - | 8.A.46.1.2 |
| TC | Rep_506_c_19 | Rep_506_c_19_21 | 24535 | 27783 | - | 1.B.14.6.1 |
| CAZyme | Rep_506_c_19 | Rep_506_c_19_22 | 27892 | 29994 | - | CE8 | GH105 |
| TC | Rep_506_c_19 | Rep_506_c_19_23 | 30251 | 31624 | + | 4.A.5.1.2 |
| pfam | Rep_506_c_19 | Rep_506_c_19_24 | 31666 | 32622 | + | KduI |
| TC | Rep_506_c_19 | Rep_506_c_19_25 | 32663 | 34129 | + | 2.A.1.14.25 |
| CAZyme | Rep_506_c_19 | Rep_506_c_19_26 | 34516 | 35817 | - | CE7 |
| pfam | Rep_506_c_19 | Rep_506_c_19_27 | 35996 | 36967 | - | PMI_typeI_cat | MPI_cupin_dom |
| CAZyme | Rep_506_c_19 | Rep_506_c_19_28 | 37145 | 38683 | - | GH109 |
Gene ID: Rep_506_c_19_12
Type: TC
Location: 11481 - 11912 (-)
Type: TC
Location: 11481 - 11912 (-)
Gene ID: Rep_506_c_19_13
Type: pfam
Location: 12141 - 13505 (+)
Type: pfam
Location: 12141 - 13505 (+)
Gene ID: Rep_506_c_19_14
Type:
Location: 13436 - 13705 (-)
Type:
Location: 13436 - 13705 (-)
Gene ID: Rep_506_c_19_15
Type: CAZyme
Location: 13750 - 15351 (+)
Type: CAZyme
Location: 13750 - 15351 (+)
Gene ID: Rep_506_c_19_16
Type: CAZyme
Location: 15365 - 16822 (+)
Type: CAZyme
Location: 15365 - 16822 (+)
Gene ID: Rep_506_c_19_17
Type: CAZyme
Location: 16860 - 19055 (+)
Type: CAZyme
Location: 16860 - 19055 (+)
Gene ID: Rep_506_c_19_18
Type: CAZyme
Location: 19065 - 20789 (+)
Type: CAZyme
Location: 19065 - 20789 (+)
Gene ID: Rep_506_c_19_19
Type: pfam
Location: 20873 - 22537 (-)
Type: pfam
Location: 20873 - 22537 (-)
Gene ID: Rep_506_c_19_20
Type: TC
Location: 22561 - 24516 (-)
Type: TC
Location: 22561 - 24516 (-)
Gene ID: Rep_506_c_19_21
Type: TC
Location: 24535 - 27783 (-)
Type: TC
Location: 24535 - 27783 (-)
Gene ID: Rep_506_c_19_22
Type: CAZyme
Location: 27892 - 29994 (-)
Type: CAZyme
Location: 27892 - 29994 (-)
Gene ID: Rep_506_c_19_23
Type: TC
Location: 30251 - 31624 (+)
Type: TC
Location: 30251 - 31624 (+)
Gene ID: Rep_506_c_19_24
Type: pfam
Location: 31666 - 32622 (+)
Type: pfam
Location: 31666 - 32622 (+)
Gene ID: Rep_506_c_19_25
Type: TC
Location: 32663 - 34129 (+)
Type: TC
Location: 32663 - 34129 (+)
Gene ID: Rep_506_c_19_26
Type: CAZyme
Location: 34516 - 35817 (-)
Type: CAZyme
Location: 34516 - 35817 (-)
Gene ID: Rep_506_c_19_27
Type: pfam
Location: 35996 - 36967 (-)
Type: pfam
Location: 35996 - 36967 (-)
Gene ID: Rep_506_c_19_28
Type: CAZyme
Location: 37145 - 38683 (-)
Type: CAZyme
Location: 37145 - 38683 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.