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Cluster: Rep_506_CGC32

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_506_c_50 Rep_506_c_50_1 2 730 - GH29
TF Rep_506_c_50 Rep_506_c_50_2 980 1837 + HTH_AraC | HTH_AraC
CAZyme Rep_506_c_50 Rep_506_c_50_3 1893 3809 - GH97
NULL(UNKNOWN) Rep_506_c_50 Rep_506_c_50_4 3828 5447 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_506_c_50 Rep_506_c_50_5 5464 6480 - ADH_zinc_N | ADH_N | ADH_zinc_N_2 | Glu_dehyd_C
TC Rep_506_c_50 Rep_506_c_50_6 6511 7767 - 2.A.1.7.1
pfam Rep_506_c_50 Rep_506_c_50_7 7779 8702 - Amidohydro_2
TC Rep_506_c_50 Rep_506_c_50_8 8717 9649 - 8.A.5.1.6
Gene ID: Rep_506_c_50_1
Type: CAZyme
Location: 2 - 730 (-)
Gene ID: Rep_506_c_50_2
Type: TF
Location: 980 - 1837 (+)
Gene ID: Rep_506_c_50_3
Type: CAZyme
Location: 1893 - 3809 (-)
Gene ID: Rep_506_c_50_4
Type:
Location: 3828 - 5447 (-)
Gene ID: Rep_506_c_50_5
Type: pfam
Location: 5464 - 6480 (-)
Gene ID: Rep_506_c_50_6
Type: TC
Location: 6511 - 7767 (-)
Gene ID: Rep_506_c_50_7
Type: pfam
Location: 7779 - 8702 (-)
Gene ID: Rep_506_c_50_8
Type: TC
Location: 8717 - 9649 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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