Cluster: Rep_506_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_506
- CGC Family ID: CGCFAM_01122
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_506_c_12 | Rep_506_c_12_28 | 35596 | 37632 | - | GH67 |
| CAZyme | Rep_506_c_12 | Rep_506_c_12_29 | 37629 | 38603 | - | GH43_1 |
| CAZyme | Rep_506_c_12 | Rep_506_c_12_30 | 38654 | 39799 | - | GH10 |
| TC | Rep_506_c_12 | Rep_506_c_12_31 | 39837 | 41330 | - | 2.A.2.3.4 |
| TC | Rep_506_c_12 | Rep_506_c_12_32 | 41879 | 42955 | + | 2.A.6.2.28 |
| TC | Rep_506_c_12 | Rep_506_c_12_33 | 42970 | 46002 | + | 2.A.6.2.33 |
Gene ID: Rep_506_c_12_28
Type: CAZyme
Location: 35596 - 37632 (-)
Type: CAZyme
Location: 35596 - 37632 (-)
Gene ID: Rep_506_c_12_29
Type: CAZyme
Location: 37629 - 38603 (-)
Type: CAZyme
Location: 37629 - 38603 (-)
Gene ID: Rep_506_c_12_30
Type: CAZyme
Location: 38654 - 39799 (-)
Type: CAZyme
Location: 38654 - 39799 (-)
Gene ID: Rep_506_c_12_31
Type: TC
Location: 39837 - 41330 (-)
Type: TC
Location: 39837 - 41330 (-)
Gene ID: Rep_506_c_12_32
Type: TC
Location: 41879 - 42955 (+)
Type: TC
Location: 41879 - 42955 (+)
Gene ID: Rep_506_c_12_33
Type: TC
Location: 42970 - 46002 (+)
Type: TC
Location: 42970 - 46002 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola merdavium
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.