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Cluster: Rep_506_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_506_c_8 Rep_506_c_8_31 39154 42342 + 1.B.14.6.1
pfam Rep_506_c_8 Rep_506_c_8_32 42355 44292 + SusD_RagB | SusD-like_3
TC Rep_506_c_8 Rep_506_c_8_33 44335 47214 + 1.B.14.6.1
pfam Rep_506_c_8 Rep_506_c_8_34 47236 49008 + SusD_RagB | SusD-like_3
pfam Rep_506_c_8 Rep_506_c_8_35 49048 50082 + BT_3987-like_N | DUF5627
CAZyme Rep_506_c_8 Rep_506_c_8_36 50087 52420 + GH10
CAZyme Rep_506_c_8 Rep_506_c_8_37 52705 55272 + GH115
CAZyme Rep_506_c_8 Rep_506_c_8_38 55305 57377 + GH43_35
Gene ID: Rep_506_c_8_31
Type: TC
Location: 39154 - 42342 (+)
Gene ID: Rep_506_c_8_32
Type: pfam
Location: 42355 - 44292 (+)
Gene ID: Rep_506_c_8_33
Type: TC
Location: 44335 - 47214 (+)
Gene ID: Rep_506_c_8_34
Type: pfam
Location: 47236 - 49008 (+)
Gene ID: Rep_506_c_8_35
Type: pfam
Location: 49048 - 50082 (+)
Gene ID: Rep_506_c_8_36
Type: CAZyme
Location: 50087 - 52420 (+)
Gene ID: Rep_506_c_8_37
Type: CAZyme
Location: 52705 - 55272 (+)
Gene ID: Rep_506_c_8_38
Type: CAZyme
Location: 55305 - 57377 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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