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Cluster: Rep_506_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_506_c_38 Rep_506_c_38_1 2 823 - GH88
CAZyme Rep_506_c_38 Rep_506_c_38_2 998 2935 - GH97
CAZyme Rep_506_c_38 Rep_506_c_38_3 2998 4941 - GH146
pfam Rep_506_c_38 Rep_506_c_38_4 5302 7077 + PDDEXK_9 | AAA-ATPase_like
CAZyme Rep_506_c_38 Rep_506_c_38_5 7209 8642 - GH28
NULL(UNKNOWN) Rep_506_c_38 Rep_506_c_38_6 8823 9212 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_506_c_38 Rep_506_c_38_7 9258 11285 - SusD_RagB | SusD-like_3
TC Rep_506_c_38 Rep_506_c_38_8 11317 14631 - 1.B.14.6.1
CAZyme Rep_506_c_38 Rep_506_c_38_9 14660 15928 - CBM32
TF Rep_506_c_38 Rep_506_c_38_10 15985 16500 - GerE
TF Rep_506_c_38 Rep_506_c_38_11 16906 19722 - HTH_AraC
CAZyme Rep_506_c_38 Rep_506_c_38_12 19810 22548 - PL40
Gene ID: Rep_506_c_38_1
Type: CAZyme
Location: 2 - 823 (-)
Gene ID: Rep_506_c_38_2
Type: CAZyme
Location: 998 - 2935 (-)
Gene ID: Rep_506_c_38_3
Type: CAZyme
Location: 2998 - 4941 (-)
Gene ID: Rep_506_c_38_4
Type: pfam
Location: 5302 - 7077 (+)
Gene ID: Rep_506_c_38_5
Type: CAZyme
Location: 7209 - 8642 (-)
Gene ID: Rep_506_c_38_6
Type:
Location: 8823 - 9212 (-)
Gene ID: Rep_506_c_38_7
Type: pfam
Location: 9258 - 11285 (-)
Gene ID: Rep_506_c_38_8
Type: TC
Location: 11317 - 14631 (-)
Gene ID: Rep_506_c_38_9
Type: CAZyme
Location: 14660 - 15928 (-)
Gene ID: Rep_506_c_38_10
Type: TF
Location: 15985 - 16500 (-)
Gene ID: Rep_506_c_38_11
Type: TF
Location: 16906 - 19722 (-)
Gene ID: Rep_506_c_38_12
Type: CAZyme
Location: 19810 - 22548 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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