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Cluster: Rep_506_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_506_c_69 Rep_506_c_69_3 1187 2086 + 3.D.6.1.4
TC Rep_506_c_69 Rep_506_c_69_4 2083 3420 + 3.D.6.1.2
TC Rep_506_c_69 Rep_506_c_69_5 3469 4476 + 3.D.6.1.2
TC Rep_506_c_69 Rep_506_c_69_6 4473 5078 + 3.D.6.1.2
TC Rep_506_c_69 Rep_506_c_69_7 5097 5681 + 3.D.6.1.2
TC Rep_506_c_69 Rep_506_c_69_8 5701 6303 + 3.D.6.1.2
pfam Rep_506_c_69 Rep_506_c_69_9 6650 9427 + UvrA_DNA-bind | UvrA_inter
CAZyme Rep_506_c_69 Rep_506_c_69_10 9464 10768 + GH3
Gene ID: Rep_506_c_69_3
Type: TC
Location: 1187 - 2086 (+)
Gene ID: Rep_506_c_69_4
Type: TC
Location: 2083 - 3420 (+)
Gene ID: Rep_506_c_69_5
Type: TC
Location: 3469 - 4476 (+)
Gene ID: Rep_506_c_69_6
Type: TC
Location: 4473 - 5078 (+)
Gene ID: Rep_506_c_69_7
Type: TC
Location: 5097 - 5681 (+)
Gene ID: Rep_506_c_69_8
Type: TC
Location: 5701 - 6303 (+)
Gene ID: Rep_506_c_69_9
Type: pfam
Location: 6650 - 9427 (+)
Gene ID: Rep_506_c_69_10
Type: CAZyme
Location: 9464 - 10768 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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