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Cluster: Rep_506_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_506_c_1 Rep_506_c_1_29 35617 36879 - 2.A.1.25.5
NULL(UNKNOWN) Rep_506_c_1 Rep_506_c_1_30 36903 37544 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_506_c_1 Rep_506_c_1_31 37701 38522 - Aldo_ket_red
CAZyme Rep_506_c_1 Rep_506_c_1_32 38718 40661 - GH18
pfam Rep_506_c_1 Rep_506_c_1_33 40698 41900 - Pentaxin | BT_3987-like_N | Laminin_G_3
pfam Rep_506_c_1 Rep_506_c_1_34 41911 42933 - GH18_BT1044-like
TC Rep_506_c_1 Rep_506_c_1_35 42961 43407 - 8.A.46.2.2
CAZyme Rep_506_c_1 Rep_506_c_1_36 43560 45818 + GH92
CAZyme Rep_506_c_1 Rep_506_c_1_37 45949 47313 - GH57
CAZyme Rep_506_c_1 Rep_506_c_1_38 47329 48603 - GT4
CAZyme Rep_506_c_1 Rep_506_c_1_39 48619 50562 - GH133
Gene ID: Rep_506_c_1_29
Type: TC
Location: 35617 - 36879 (-)
Gene ID: Rep_506_c_1_30
Type:
Location: 36903 - 37544 (-)
Gene ID: Rep_506_c_1_31
Type: pfam
Location: 37701 - 38522 (-)
Gene ID: Rep_506_c_1_32
Type: CAZyme
Location: 38718 - 40661 (-)
Gene ID: Rep_506_c_1_33
Type: pfam
Location: 40698 - 41900 (-)
Gene ID: Rep_506_c_1_34
Type: pfam
Location: 41911 - 42933 (-)
Gene ID: Rep_506_c_1_35
Type: TC
Location: 42961 - 43407 (-)
Gene ID: Rep_506_c_1_36
Type: CAZyme
Location: 43560 - 45818 (+)
Gene ID: Rep_506_c_1_37
Type: CAZyme
Location: 45949 - 47313 (-)
Gene ID: Rep_506_c_1_38
Type: CAZyme
Location: 47329 - 48603 (-)
Gene ID: Rep_506_c_1_39
Type: CAZyme
Location: 48619 - 50562 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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