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Genome Details

Selected Rep_genome_ID: Rep_450
Total Genomes Found: 5
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→
Species
Phocaeicola massiliensis
Genomes Table
Genome ID Genome Length Completeness Contamination Country Continent Source
C111.bin_7 4,098,029 99.26% 0.31% China(Inner Mongolia) Asia IMGG
CGMR041658 3,562,175 95.45% 0.19% China Asia CGMR
DM005_bin.42 3,747,695 98.62% 0.56% NA Africa H3AfricaPhase2
Rep_450 3,937,941 98.798% 0.185874% NA NA WIS
SPMP27_bin.51 3,947,761 90.71% 1.61% Singapore Asia SPMP
Analysis Charts
CGCs
Gene Cluster ID Family Name In Labeled Family Gene Count CAZyme Count Substrate
Rep_450_CGC13 CGCFAM_00001 Yes 3 1 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
Rep_450_CGC37 CGCFAM_00001 Yes 4 1 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
Rep_450_CGC38 CGCFAM_00001 Yes 4 1 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
Rep_450_CGC40 CGCFAM_00001 Yes 8 2 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
Rep_450_CGC47 CGCFAM_00001 Yes 5 2 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
Rep_450_CGC65 CGCFAM_00001 Yes 6 1 pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
Rep_450_CGC60 CGCFAM_00003 Yes 11 7
Rep_450_CGC17 CGCFAM_00006 Yes 23 16
Rep_450_CGC67 CGCFAM_00025 Yes 5 1 pectin/alpha-glucan
Rep_450_CGC61 CGCFAM_00031 Yes 8 2 pectin/galactan
Rep_450_CGC52 CGCFAM_00111 Yes 8 4 alpha-glucan
Rep_450_CGC12 CGCFAM_00194 Yes 14 9 host glycan
Rep_450_CGC41 CGCFAM_00254 Yes 6 2
Rep_450_CGC56 CGCFAM_00375 Yes 4 2
Rep_450_CGC57 CGCFAM_00633 Yes 7 1
Rep_450_CGC51 CGCFAM_00670 Yes 12 2
Rep_450_CGC23 CGCFAM_00755 Yes 7 2
Rep_450_CGC1 CGCFAM_01890 Yes 5 3
Rep_450_CGC30 CGCFAM_01908 Yes 14 6
Rep_450_CGC34 CGCFAM_02272 Yes 3 1
Rep_450_CGC14 CGCFAM_02545 Yes 7 1
Rep_450_CGC66 CGCFAM_02929 Yes 10 3
Rep_450_CGC31 CGCFAM_02997 Yes 8 1
Rep_450_CGC50 CGCFAM_03629 Yes 8 1
Rep_450_CGC4 CGCFAM_03772 Yes 5 2
Top CAZyme Families