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Cluster: Rep_450_CGC51

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_450_c_1 Rep_450_c_1_611 750526 752496 - GH20
pfam Rep_450_c_1 Rep_450_c_1_612 752681 753322 + CBM9_2
pfam Rep_450_c_1 Rep_450_c_1_613 753408 753965 + LemA
TC Rep_450_c_1 Rep_450_c_1_614 753971 754942 + 9.B.1.1.5
CAZyme Rep_450_c_1 Rep_450_c_1_615 754946 755839 + GH73
pfam Rep_450_c_1 Rep_450_c_1_616 756005 757252 + HlyD_3
TC Rep_450_c_1 Rep_450_c_1_617 757391 758695 + 3.A.1.122.2
pfam Rep_450_c_1 Rep_450_c_1_618 758711 760024 + FtsX | MacB_PCD
TC Rep_450_c_1 Rep_450_c_1_619 760192 760863 + 3.A.1.122.2
pfam Rep_450_c_1 Rep_450_c_1_620 760957 762237 + FtsX | MacB_PCD
pfam Rep_450_c_1 Rep_450_c_1_621 762242 763504 + FtsX
TC Rep_450_c_1 Rep_450_c_1_622 763546 764820 + 3.A.1.122.2
Gene ID: Rep_450_c_1_611
Type: CAZyme
Location: 750526 - 752496 (-)
Gene ID: Rep_450_c_1_612
Type: pfam
Location: 752681 - 753322 (+)
Gene ID: Rep_450_c_1_613
Type: pfam
Location: 753408 - 753965 (+)
Gene ID: Rep_450_c_1_614
Type: TC
Location: 753971 - 754942 (+)
Gene ID: Rep_450_c_1_615
Type: CAZyme
Location: 754946 - 755839 (+)
Gene ID: Rep_450_c_1_616
Type: pfam
Location: 756005 - 757252 (+)
Gene ID: Rep_450_c_1_617
Type: TC
Location: 757391 - 758695 (+)
Gene ID: Rep_450_c_1_618
Type: pfam
Location: 758711 - 760024 (+)
Gene ID: Rep_450_c_1_619
Type: TC
Location: 760192 - 760863 (+)
Gene ID: Rep_450_c_1_620
Type: pfam
Location: 760957 - 762237 (+)
Gene ID: Rep_450_c_1_621
Type: pfam
Location: 762242 - 763504 (+)
Gene ID: Rep_450_c_1_622
Type: TC
Location: 763546 - 764820 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_450_c_1_620 vegetarian > vegan 1.51855 0.01856

🧭 Explore Read Mapping of CGC

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