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Cluster: Rep_450_CGC50

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_450_c_1 Rep_450_c_1_524 655658 658738 + 2.A.6.3.6
pfam Rep_450_c_1 Rep_450_c_1_525 658725 660209 + OEP | OEP
TC Rep_450_c_1 Rep_450_c_1_526 660206 663382 + 2.A.6.3.6
NULL(UNKNOWN) Rep_450_c_1 Rep_450_c_1_527 663705 665453 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_450_c_1 Rep_450_c_1_528 665605 665973 + DUF3244
CAZyme Rep_450_c_1 Rep_450_c_1_529 666249 667412 + CE9
pfam Rep_450_c_1 Rep_450_c_1_530 667560 668135 + Sua5_yciO_yrdC
TC Rep_450_c_1 Rep_450_c_1_531 668146 669945 + 2.A.49.6.1
Gene ID: Rep_450_c_1_524
Type: TC
Location: 655658 - 658738 (+)
Gene ID: Rep_450_c_1_525
Type: pfam
Location: 658725 - 660209 (+)
Gene ID: Rep_450_c_1_526
Type: TC
Location: 660206 - 663382 (+)
Gene ID: Rep_450_c_1_527
Type:
Location: 663705 - 665453 (+)
Gene ID: Rep_450_c_1_528
Type: pfam
Location: 665605 - 665973 (+)
Gene ID: Rep_450_c_1_529
Type: CAZyme
Location: 666249 - 667412 (+)
Gene ID: Rep_450_c_1_530
Type: pfam
Location: 667560 - 668135 (+)
Gene ID: Rep_450_c_1_531
Type: TC
Location: 668146 - 669945 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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