Cluster: Rep_450_CGC17
🧬 Cluster Details
- Gene Count: 23
- CAZyme Count: 16
- Substrate:
- Genome ID: Rep_450
- CGC Family ID: CGCFAM_00006
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_450_c_0 | Rep_450_c_0_974 | 1179360 | 1180544 | - | GT2 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_975 | 1180541 | 1181662 | - | GT4 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_976 | 1181670 | 1182518 | - | GT2 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_977 | 1182525 | 1183676 | - | GT4 |
| NULL(UNKNOWN) | Rep_450_c_0 | Rep_450_c_0_978 | 1183738 | 1184874 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_979 | 1184871 | 1186022 | - | GT4 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_980 | 1186019 | 1187167 | - | GT4 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_981 | 1187164 | 1188312 | - | GT4 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_982 | 1188309 | 1189481 | - | GT4 |
| NULL(UNKNOWN) | Rep_450_c_0 | Rep_450_c_0_983 | 1189889 | 1190113 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_450_c_0 | Rep_450_c_0_984 | 1190215 | 1191177 | - | Acyl_transf_3 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_985 | 1191308 | 1192195 | + | GT111 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_986 | 1192211 | 1193380 | + | GT4 |
| TC | Rep_450_c_0 | Rep_450_c_0_987 | 1193356 | 1194249 | + | 3.A.1.103.5 |
| TC | Rep_450_c_0 | Rep_450_c_0_988 | 1194261 | 1195538 | + | 3.A.1.103.5 |
| NULL(UNKNOWN) | Rep_450_c_0 | Rep_450_c_0_989 | 1195543 | 1196379 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_990 | 1196372 | 1197175 | + | GT2 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_991 | 1197160 | 1198122 | - | GT2 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_992 | 1198126 | 1198950 | - | GT111 |
| pfam | Rep_450_c_0 | Rep_450_c_0_993 | 1198957 | 1199571 | - | Hexapep | Hexapep_2 | Hexapep_2 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_994 | 1199568 | 1200737 | - | GT2 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_995 | 1200744 | 1201871 | - | GT2 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_996 | 1201868 | 1202773 | - | GT2 |
Gene ID: Rep_450_c_0_974
Type: CAZyme
Location: 1179360 - 1180544 (-)
Type: CAZyme
Location: 1179360 - 1180544 (-)
Gene ID: Rep_450_c_0_975
Type: CAZyme
Location: 1180541 - 1181662 (-)
Type: CAZyme
Location: 1180541 - 1181662 (-)
Gene ID: Rep_450_c_0_976
Type: CAZyme
Location: 1181670 - 1182518 (-)
Type: CAZyme
Location: 1181670 - 1182518 (-)
Gene ID: Rep_450_c_0_977
Type: CAZyme
Location: 1182525 - 1183676 (-)
Type: CAZyme
Location: 1182525 - 1183676 (-)
Gene ID: Rep_450_c_0_978
Type:
Location: 1183738 - 1184874 (-)
Type:
Location: 1183738 - 1184874 (-)
Gene ID: Rep_450_c_0_979
Type: CAZyme
Location: 1184871 - 1186022 (-)
Type: CAZyme
Location: 1184871 - 1186022 (-)
Gene ID: Rep_450_c_0_980
Type: CAZyme
Location: 1186019 - 1187167 (-)
Type: CAZyme
Location: 1186019 - 1187167 (-)
Gene ID: Rep_450_c_0_981
Type: CAZyme
Location: 1187164 - 1188312 (-)
Type: CAZyme
Location: 1187164 - 1188312 (-)
Gene ID: Rep_450_c_0_982
Type: CAZyme
Location: 1188309 - 1189481 (-)
Type: CAZyme
Location: 1188309 - 1189481 (-)
Gene ID: Rep_450_c_0_983
Type:
Location: 1189889 - 1190113 (+)
Type:
Location: 1189889 - 1190113 (+)
Gene ID: Rep_450_c_0_984
Type: pfam
Location: 1190215 - 1191177 (-)
Type: pfam
Location: 1190215 - 1191177 (-)
Gene ID: Rep_450_c_0_985
Type: CAZyme
Location: 1191308 - 1192195 (+)
Type: CAZyme
Location: 1191308 - 1192195 (+)
Gene ID: Rep_450_c_0_986
Type: CAZyme
Location: 1192211 - 1193380 (+)
Type: CAZyme
Location: 1192211 - 1193380 (+)
Gene ID: Rep_450_c_0_987
Type: TC
Location: 1193356 - 1194249 (+)
Type: TC
Location: 1193356 - 1194249 (+)
Gene ID: Rep_450_c_0_988
Type: TC
Location: 1194261 - 1195538 (+)
Type: TC
Location: 1194261 - 1195538 (+)
Gene ID: Rep_450_c_0_989
Type:
Location: 1195543 - 1196379 (+)
Type:
Location: 1195543 - 1196379 (+)
Gene ID: Rep_450_c_0_990
Type: CAZyme
Location: 1196372 - 1197175 (+)
Type: CAZyme
Location: 1196372 - 1197175 (+)
Gene ID: Rep_450_c_0_991
Type: CAZyme
Location: 1197160 - 1198122 (-)
Type: CAZyme
Location: 1197160 - 1198122 (-)
Gene ID: Rep_450_c_0_992
Type: CAZyme
Location: 1198126 - 1198950 (-)
Type: CAZyme
Location: 1198126 - 1198950 (-)
Gene ID: Rep_450_c_0_993
Type: pfam
Location: 1198957 - 1199571 (-)
Type: pfam
Location: 1198957 - 1199571 (-)
Gene ID: Rep_450_c_0_994
Type: CAZyme
Location: 1199568 - 1200737 (-)
Type: CAZyme
Location: 1199568 - 1200737 (-)
Gene ID: Rep_450_c_0_995
Type: CAZyme
Location: 1200744 - 1201871 (-)
Type: CAZyme
Location: 1200744 - 1201871 (-)
Gene ID: Rep_450_c_0_996
Type: CAZyme
Location: 1201868 - 1202773 (-)
Type: CAZyme
Location: 1201868 - 1202773 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.