Cluster: Rep_450_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_450
- CGC Family ID: CGCFAM_03772
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_450_c_0 | Rep_450_c_0_215 | 237760 | 239505 | + | GT4 |
| NULL(UNKNOWN) | Rep_450_c_0 | Rep_450_c_0_216 | 240011 | 240244 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_450_c_0 | Rep_450_c_0_217 | 242352 | 242573 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_218 | 246209 | 249157 | + | GH105 | PL33_2 |
| TC | Rep_450_c_0 | Rep_450_c_0_219 | 249289 | 249774 | + | 1.B.14.6.1 |
Gene ID: Rep_450_c_0_215
Type: CAZyme
Location: 237760 - 239505 (+)
Type: CAZyme
Location: 237760 - 239505 (+)
Gene ID: Rep_450_c_0_216
Type:
Location: 240011 - 240244 (-)
Type:
Location: 240011 - 240244 (-)
Gene ID: Rep_450_c_0_217
Type:
Location: 242352 - 242573 (-)
Type:
Location: 242352 - 242573 (-)
Gene ID: Rep_450_c_0_218
Type: CAZyme
Location: 246209 - 249157 (+)
Type: CAZyme
Location: 246209 - 249157 (+)
Gene ID: Rep_450_c_0_219
Type: TC
Location: 249289 - 249774 (+)
Type: TC
Location: 249289 - 249774 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.