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Cluster: Rep_450_CGC61

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_450_c_2 Rep_450_c_2_275 349866 351863 - 2.A.21.9.2
NULL(UNKNOWN) Rep_450_c_2 Rep_450_c_2_276 352126 352242 + NULL(UNKNOWN)
[View Structural Homologs]
TF Rep_450_c_2 Rep_450_c_2_277 352333 356253 + HTH_AraC
CAZyme Rep_450_c_2 Rep_450_c_2_278 356391 358850 + GH147
TC Rep_450_c_2 Rep_450_c_2_279 358883 361858 + 1.B.14.6.1
pfam Rep_450_c_2 Rep_450_c_2_280 361869 363455 + SusD_RagB | SusD-like_3
pfam Rep_450_c_2 Rep_450_c_2_281 363471 365180 + SusE | DUF5111 | DUF5114
CAZyme Rep_450_c_2 Rep_450_c_2_282 365188 366231 + GH53
Gene ID: Rep_450_c_2_275
Type: TC
Location: 349866 - 351863 (-)
Gene ID: Rep_450_c_2_276
Type:
Location: 352126 - 352242 (+)
Gene ID: Rep_450_c_2_277
Type: TF
Location: 352333 - 356253 (+)
Gene ID: Rep_450_c_2_278
Type: CAZyme
Location: 356391 - 358850 (+)
Gene ID: Rep_450_c_2_279
Type: TC
Location: 358883 - 361858 (+)
Gene ID: Rep_450_c_2_280
Type: pfam
Location: 361869 - 363455 (+)
Gene ID: Rep_450_c_2_281
Type: pfam
Location: 363471 - 365180 (+)
Gene ID: Rep_450_c_2_282
Type: CAZyme
Location: 365188 - 366231 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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