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Cluster: Rep_450_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_450_c_0 Rep_450_c_0_850 1047740 1048561 + CE1
pfam Rep_450_c_0 Rep_450_c_0_851 1048565 1049323 + adh_short | KR | adh_short_C2
pfam Rep_450_c_0 Rep_450_c_0_852 1049427 1049675 - Cyc-maltodext_C
TC Rep_450_c_0 Rep_450_c_0_853 1049851 1051011 - 3.B.1.1.2
TC Rep_450_c_0 Rep_450_c_0_854 1051013 1051444 - 3.B.1.1.2
pfam Rep_450_c_0 Rep_450_c_0_855 1051469 1052398 - LTD | OAD_gamma
TC Rep_450_c_0 Rep_450_c_0_856 1052430 1053983 - 3.B.1.1.2
Gene ID: Rep_450_c_0_850
Type: CAZyme
Location: 1047740 - 1048561 (+)
Gene ID: Rep_450_c_0_851
Type: pfam
Location: 1048565 - 1049323 (+)
Gene ID: Rep_450_c_0_852
Type: pfam
Location: 1049427 - 1049675 (-)
Gene ID: Rep_450_c_0_853
Type: TC
Location: 1049851 - 1051011 (-)
Gene ID: Rep_450_c_0_854
Type: TC
Location: 1051013 - 1051444 (-)
Gene ID: Rep_450_c_0_855
Type: pfam
Location: 1051469 - 1052398 (-)
Gene ID: Rep_450_c_0_856
Type: TC
Location: 1052430 - 1053983 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_450_c_0_855 vegan > omnivore 1.15210 0.00701

🧭 Explore Read Mapping of CGC

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