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Cluster: Rep_450_CGC66

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_450_c_2 Rep_450_c_2_520 661398 662639 - GH154
pfam Rep_450_c_2 Rep_450_c_2_521 662648 663547 - Sulfatase | Phosphodiest | Metalloenzyme
CAZyme Rep_450_c_2 Rep_450_c_2_522 663568 664779 - GH88
CAZyme Rep_450_c_2 Rep_450_c_2_523 664781 666685 - PL33_1
TC Rep_450_c_2 Rep_450_c_2_524 666897 668732 - 8.A.46.1.5
TC Rep_450_c_2 Rep_450_c_2_525 668753 671809 - 1.B.14.6.1
pfam Rep_450_c_2 Rep_450_c_2_526 671855 672475 + Resolvase
TC Rep_450_c_2 Rep_450_c_2_527 672677 676114 + 1.B.14.6.1
pfam Rep_450_c_2 Rep_450_c_2_528 676131 678035 + SusD_RagB | SusD-like_3
TC Rep_450_c_2 Rep_450_c_2_529 678330 681443 + 1.B.14.6.1
Gene ID: Rep_450_c_2_520
Type: CAZyme
Location: 661398 - 662639 (-)
Gene ID: Rep_450_c_2_521
Type: pfam
Location: 662648 - 663547 (-)
Gene ID: Rep_450_c_2_522
Type: CAZyme
Location: 663568 - 664779 (-)
Gene ID: Rep_450_c_2_523
Type: CAZyme
Location: 664781 - 666685 (-)
Gene ID: Rep_450_c_2_524
Type: TC
Location: 666897 - 668732 (-)
Gene ID: Rep_450_c_2_525
Type: TC
Location: 668753 - 671809 (-)
Gene ID: Rep_450_c_2_526
Type: pfam
Location: 671855 - 672475 (+)
Gene ID: Rep_450_c_2_527
Type: TC
Location: 672677 - 676114 (+)
Gene ID: Rep_450_c_2_528
Type: pfam
Location: 676131 - 678035 (+)
Gene ID: Rep_450_c_2_529
Type: TC
Location: 678330 - 681443 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_450_c_2_528 vegetarian > vegan 2.19566 0.02855

🧭 Explore Read Mapping of CGC

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