Cluster: Rep_450_CGC30
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_450
- CGC Family ID: CGCFAM_01908
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_450_c_0 | Rep_450_c_0_1810 | 2162872 | 2163381 | + | GT11 |
| TC | Rep_450_c_0 | Rep_450_c_0_1811 | 2163388 | 2164824 | + | 2.A.66.2.2 |
| pfam | Rep_450_c_0 | Rep_450_c_0_1812 | 2164836 | 2165951 | + | Glyphos_transf |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_1813 | 2165942 | 2166832 | + | GT32 |
| pfam | Rep_450_c_0 | Rep_450_c_0_1814 | 2166829 | 2168124 | + | Wzy_C |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_1815 | 2168075 | 2169091 | + | GT2 |
| NULL(UNKNOWN) | Rep_450_c_0 | Rep_450_c_0_1816 | 2169172 | 2169561 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_450_c_0 | Rep_450_c_0_1817 | 2169558 | 2170385 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_1818 | 2170385 | 2171206 | + | GT11 |
| pfam | Rep_450_c_0 | Rep_450_c_0_1819 | 2171225 | 2171770 | + | Hexapep | Glycos_transf_2 | Hexapep_2 | Hexapep_2 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_1820 | 2171778 | 2172971 | + | GT4 |
| NULL(UNKNOWN) | Rep_450_c_0 | Rep_450_c_0_1821 | 2173080 | 2173337 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_450_c_0 | Rep_450_c_0_1822 | 2173481 | 2174476 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_1823 | 2174774 | 2175526 | + | GT26 |
Gene ID: Rep_450_c_0_1810
Type: CAZyme
Location: 2162872 - 2163381 (+)
Type: CAZyme
Location: 2162872 - 2163381 (+)
Gene ID: Rep_450_c_0_1811
Type: TC
Location: 2163388 - 2164824 (+)
Type: TC
Location: 2163388 - 2164824 (+)
Gene ID: Rep_450_c_0_1812
Type: pfam
Location: 2164836 - 2165951 (+)
Type: pfam
Location: 2164836 - 2165951 (+)
Gene ID: Rep_450_c_0_1813
Type: CAZyme
Location: 2165942 - 2166832 (+)
Type: CAZyme
Location: 2165942 - 2166832 (+)
Gene ID: Rep_450_c_0_1814
Type: pfam
Location: 2166829 - 2168124 (+)
Type: pfam
Location: 2166829 - 2168124 (+)
Gene ID: Rep_450_c_0_1815
Type: CAZyme
Location: 2168075 - 2169091 (+)
Type: CAZyme
Location: 2168075 - 2169091 (+)
Gene ID: Rep_450_c_0_1816
Type:
Location: 2169172 - 2169561 (+)
Type:
Location: 2169172 - 2169561 (+)
Gene ID: Rep_450_c_0_1817
Type:
Location: 2169558 - 2170385 (+)
Type:
Location: 2169558 - 2170385 (+)
Gene ID: Rep_450_c_0_1818
Type: CAZyme
Location: 2170385 - 2171206 (+)
Type: CAZyme
Location: 2170385 - 2171206 (+)
Gene ID: Rep_450_c_0_1819
Type: pfam
Location: 2171225 - 2171770 (+)
Type: pfam
Location: 2171225 - 2171770 (+)
Gene ID: Rep_450_c_0_1820
Type: CAZyme
Location: 2171778 - 2172971 (+)
Type: CAZyme
Location: 2171778 - 2172971 (+)
Gene ID: Rep_450_c_0_1821
Type:
Location: 2173080 - 2173337 (+)
Type:
Location: 2173080 - 2173337 (+)
Gene ID: Rep_450_c_0_1822
Type:
Location: 2173481 - 2174476 (+)
Type:
Location: 2173481 - 2174476 (+)
Gene ID: Rep_450_c_0_1823
Type: CAZyme
Location: 2174774 - 2175526 (+)
Type: CAZyme
Location: 2174774 - 2175526 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.