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Cluster: Rep_450_CGC52

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_450_c_2 Rep_450_c_2_20 22304 24409 - GH2
CAZyme Rep_450_c_2 Rep_450_c_2_21 24447 25556 - GH105
CAZyme Rep_450_c_2 Rep_450_c_2_22 25574 27016 - GH29
TC Rep_450_c_2 Rep_450_c_2_23 27262 29103 - 8.A.46.1.6
TC Rep_450_c_2 Rep_450_c_2_24 29116 32460 - 1.B.14.6.1
STP Rep_450_c_2 Rep_450_c_2_25 32697 33698 - FecR
TF Rep_450_c_2 Rep_450_c_2_26 33776 34321 - GerE
CAZyme Rep_450_c_2 Rep_450_c_2_27 34425 35645 - GT30
Gene ID: Rep_450_c_2_20
Type: CAZyme
Location: 22304 - 24409 (-)
Gene ID: Rep_450_c_2_21
Type: CAZyme
Location: 24447 - 25556 (-)
Gene ID: Rep_450_c_2_22
Type: CAZyme
Location: 25574 - 27016 (-)
Gene ID: Rep_450_c_2_23
Type: TC
Location: 27262 - 29103 (-)
Gene ID: Rep_450_c_2_24
Type: TC
Location: 29116 - 32460 (-)
Gene ID: Rep_450_c_2_25
Type: STP
Location: 32697 - 33698 (-)
Gene ID: Rep_450_c_2_26
Type: TF
Location: 33776 - 34321 (-)
Gene ID: Rep_450_c_2_27
Type: CAZyme
Location: 34425 - 35645 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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