Cluster: Rep_450_CGC12
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 9
- Substrate: host glycan
- Genome ID: Rep_450
- CGC Family ID: CGCFAM_00194
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_450_c_0 | Rep_450_c_0_717 | 873879 | 877136 | + | 1.B.14.6.1 |
| TC | Rep_450_c_0 | Rep_450_c_0_718 | 877167 | 878681 | + | 8.A.46.1.4 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_719 | 878809 | 880449 | + | CBM93 | GH33 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_720 | 880480 | 882459 | + | GH20 |
| sulfatase | Rep_450_c_0 | Rep_450_c_0_721 | 882461 | 883126 | + | S1_16 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_722 | 883123 | 885192 | + | CE20 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_723 | 885245 | 887845 | + | GH2 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_724 | 887861 | 890185 | + | GH20 |
| pfam | Rep_450_c_0 | Rep_450_c_0_725 | 890202 | 891341 | + | Kelch_1 | Kelch_2 | Kelch_6 | Kelch_KLHDC2_KLHL20_DRC7 | NANM | NANM |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_726 | 891338 | 893398 | + | GH20 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_727 | 893405 | 895657 | + | GH92 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_728 | 895666 | 898170 | + | GH2 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_729 | 898349 | 899512 | + | CE9 |
| TC | Rep_450_c_0 | Rep_450_c_0_730 | 899736 | 900389 | - | 3.A.1.128.2 |
Gene ID: Rep_450_c_0_717
Type: TC
Location: 873879 - 877136 (+)
Type: TC
Location: 873879 - 877136 (+)
Gene ID: Rep_450_c_0_718
Type: TC
Location: 877167 - 878681 (+)
Type: TC
Location: 877167 - 878681 (+)
Gene ID: Rep_450_c_0_719
Type: CAZyme
Location: 878809 - 880449 (+)
Type: CAZyme
Location: 878809 - 880449 (+)
Gene ID: Rep_450_c_0_720
Type: CAZyme
Location: 880480 - 882459 (+)
Type: CAZyme
Location: 880480 - 882459 (+)
Gene ID: Rep_450_c_0_721
Type: sulfatase
Location: 882461 - 883126 (+)
Type: sulfatase
Location: 882461 - 883126 (+)
Gene ID: Rep_450_c_0_722
Type: CAZyme
Location: 883123 - 885192 (+)
Type: CAZyme
Location: 883123 - 885192 (+)
Gene ID: Rep_450_c_0_723
Type: CAZyme
Location: 885245 - 887845 (+)
Type: CAZyme
Location: 885245 - 887845 (+)
Gene ID: Rep_450_c_0_724
Type: CAZyme
Location: 887861 - 890185 (+)
Type: CAZyme
Location: 887861 - 890185 (+)
Gene ID: Rep_450_c_0_725
Type: pfam
Location: 890202 - 891341 (+)
Type: pfam
Location: 890202 - 891341 (+)
Gene ID: Rep_450_c_0_726
Type: CAZyme
Location: 891338 - 893398 (+)
Type: CAZyme
Location: 891338 - 893398 (+)
Gene ID: Rep_450_c_0_727
Type: CAZyme
Location: 893405 - 895657 (+)
Type: CAZyme
Location: 893405 - 895657 (+)
Gene ID: Rep_450_c_0_728
Type: CAZyme
Location: 895666 - 898170 (+)
Type: CAZyme
Location: 895666 - 898170 (+)
Gene ID: Rep_450_c_0_729
Type: CAZyme
Location: 898349 - 899512 (+)
Type: CAZyme
Location: 898349 - 899512 (+)
Gene ID: Rep_450_c_0_730
Type: TC
Location: 899736 - 900389 (-)
Type: TC
Location: 899736 - 900389 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.