Genome Details
Selected Rep_genome_ID: Rep_450
Total Genomes Found: 5
Total Genomes Found: 5
Read Mapping - JBrowse
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola massiliensis
Genomes Table
| Genome ID | Genome Length | Completeness | Contamination | Country | Continent | Source |
|---|---|---|---|---|---|---|
| C111.bin_7 | 4,098,029 | 99.26% | 0.31% | China(Inner Mongolia) | Asia | IMGG |
| CGMR041658 | 3,562,175 | 95.45% | 0.19% | China | Asia | CGMR |
| DM005_bin.42 | 3,747,695 | 98.62% | 0.56% | NA | Africa | H3AfricaPhase2 |
| Rep_450 | 3,937,941 | 98.798% | 0.185874% | NA | NA | WIS |
| SPMP27_bin.51 | 3,947,761 | 90.71% | 1.61% | Singapore | Asia | SPMP |
Analysis Charts
CGCs
| Gene Cluster ID | Family Name | In Labeled Family | Gene Count | CAZyme Count | Substrate |
|---|---|---|---|---|---|
| Rep_450_CGC44 | CGCFAM_03937 | Yes | 7 | 1 | |
| Rep_450_CGC18 | CGCFAM_04548 | Yes | 9 | 6 | |
| Rep_450_CGC35 | CGCFAM_05201 | Yes | 5 | 1 | |
| Rep_450_CGC19 | CGCFAM_05533 | Yes | 8 | 1 | |
| Rep_450_CGC36 | CGCFAM_06310 | Yes | 8 | 3 | |
| Rep_450_CGC53 | CGCFAM_07154 | Yes | 4 | 2 | |
| Rep_450_CGC29 | CGCFAM_08518 | Yes | 12 | 1 | |
| Rep_450_CGC49 | CGCFAM_08519 | Yes | 7 | 4 | |
| Rep_450_CGC5 | CGCFAM_08520 | Yes | 7 | 3 | |
| Rep_450_CGC9 | CGCFAM_08522 | Yes | 8 | 1 | |
| Rep_450_CGC7 | CGCFAM_08524 | Yes | 13 | 4 | |
| Rep_450_CGC55 | CGCFAM_08891 | Yes | 5 | 1 | |
| Rep_450_CGC21 | CGCFAM_09201 | Yes | 6 | 1 |
Top CAZyme Families