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Cluster: Rep_450_CGC36

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_450_c_1 Rep_450_c_1_85 83801 86026 + GH92
CAZyme Rep_450_c_1 Rep_450_c_1_86 86067 88331 + GH92
CAZyme Rep_450_c_1 Rep_450_c_1_87 88349 90658 + GH92
NULL(UNKNOWN) Rep_450_c_1 Rep_450_c_1_88 90679 91203 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_450_c_1 Rep_450_c_1_89 91573 92418 + 1.A.23.2.1
pfam Rep_450_c_1 Rep_450_c_1_90 92453 93130 + OMP_b-brl | OMP_b-brl_2
NULL(UNKNOWN) Rep_450_c_1 Rep_450_c_1_91 93162 93362 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_450_c_1 Rep_450_c_1_92 93369 94133 + 1.A.1.24.5
Gene ID: Rep_450_c_1_85
Type: CAZyme
Location: 83801 - 86026 (+)
Gene ID: Rep_450_c_1_86
Type: CAZyme
Location: 86067 - 88331 (+)
Gene ID: Rep_450_c_1_87
Type: CAZyme
Location: 88349 - 90658 (+)
Gene ID: Rep_450_c_1_88
Type:
Location: 90679 - 91203 (-)
Gene ID: Rep_450_c_1_89
Type: TC
Location: 91573 - 92418 (+)
Gene ID: Rep_450_c_1_90
Type: pfam
Location: 92453 - 93130 (+)
Gene ID: Rep_450_c_1_91
Type:
Location: 93162 - 93362 (+)
Gene ID: Rep_450_c_1_92
Type: TC
Location: 93369 - 94133 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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