Cluster: Rep_450_CGC29
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_450
- CGC Family ID: CGCFAM_08518
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_450_c_0 | Rep_450_c_0_1788 | 2135554 | 2136906 | - | 2.A.66.1.33 |
| NULL(UNKNOWN) | Rep_450_c_0 | Rep_450_c_0_1789 | 2137137 | 2137370 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_450_c_0 | Rep_450_c_0_1790 | 2137618 | 2138808 | + | 2.A.6.2.29 |
| TC | Rep_450_c_0 | Rep_450_c_0_1791 | 2138846 | 2141944 | + | 2.A.6.2.22 |
| TC | Rep_450_c_0 | Rep_450_c_0_1792 | 2141958 | 2143331 | + | 2.A.6.2.20 |
| CAZyme | Rep_450_c_0 | Rep_450_c_0_1793 | 2143360 | 2145582 | - | GH139 |
| TC | Rep_450_c_0 | Rep_450_c_0_1794 | 2145603 | 2147201 | - | 2.A.81.1.2 |
| NULL(UNKNOWN) | Rep_450_c_0 | Rep_450_c_0_1795 | 2147249 | 2147344 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_450_c_0 | Rep_450_c_0_1796 | 2147386 | 2147559 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_450_c_0 | Rep_450_c_0_1797 | 2147589 | 2148992 | + | 9.B.18.1.1 |
| TC | Rep_450_c_0 | Rep_450_c_0_1798 | 2149027 | 2149818 | + | 1.B.18.3.3 |
| TC | Rep_450_c_0 | Rep_450_c_0_1799 | 2149836 | 2152223 | + | 8.A.3.3.4 |
Gene ID: Rep_450_c_0_1788
Type: TC
Location: 2135554 - 2136906 (-)
Type: TC
Location: 2135554 - 2136906 (-)
Gene ID: Rep_450_c_0_1789
Type:
Location: 2137137 - 2137370 (-)
Type:
Location: 2137137 - 2137370 (-)
Gene ID: Rep_450_c_0_1790
Type: TC
Location: 2137618 - 2138808 (+)
Type: TC
Location: 2137618 - 2138808 (+)
Gene ID: Rep_450_c_0_1791
Type: TC
Location: 2138846 - 2141944 (+)
Type: TC
Location: 2138846 - 2141944 (+)
Gene ID: Rep_450_c_0_1792
Type: TC
Location: 2141958 - 2143331 (+)
Type: TC
Location: 2141958 - 2143331 (+)
Gene ID: Rep_450_c_0_1793
Type: CAZyme
Location: 2143360 - 2145582 (-)
Type: CAZyme
Location: 2143360 - 2145582 (-)
Gene ID: Rep_450_c_0_1794
Type: TC
Location: 2145603 - 2147201 (-)
Type: TC
Location: 2145603 - 2147201 (-)
Gene ID: Rep_450_c_0_1795
Type:
Location: 2147249 - 2147344 (+)
Type:
Location: 2147249 - 2147344 (+)
Gene ID: Rep_450_c_0_1796
Type:
Location: 2147386 - 2147559 (-)
Type:
Location: 2147386 - 2147559 (-)
Gene ID: Rep_450_c_0_1797
Type: TC
Location: 2147589 - 2148992 (+)
Type: TC
Location: 2147589 - 2148992 (+)
Gene ID: Rep_450_c_0_1798
Type: TC
Location: 2149027 - 2149818 (+)
Type: TC
Location: 2149027 - 2149818 (+)
Gene ID: Rep_450_c_0_1799
Type: TC
Location: 2149836 - 2152223 (+)
Type: TC
Location: 2149836 - 2152223 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.