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Cluster: Rep_450_CGC49

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_450_c_1 Rep_450_c_1_483 605741 607300 + 2.A.21.3.2
CAZyme Rep_450_c_1 Rep_450_c_1_484 607328 610324 + GH2
CAZyme Rep_450_c_1 Rep_450_c_1_485 610352 613771 + GH2
CAZyme Rep_450_c_1 Rep_450_c_1_486 613917 616256 + GH35
pfam Rep_450_c_1 Rep_450_c_1_487 616416 617915 - PD40 | PD40 | PD40
pfam Rep_450_c_1 Rep_450_c_1_488 617923 619683 - DUF6057
CAZyme Rep_450_c_1 Rep_450_c_1_489 619787 621535 - GH123
Gene ID: Rep_450_c_1_483
Type: TC
Location: 605741 - 607300 (+)
Gene ID: Rep_450_c_1_484
Type: CAZyme
Location: 607328 - 610324 (+)
Gene ID: Rep_450_c_1_485
Type: CAZyme
Location: 610352 - 613771 (+)
Gene ID: Rep_450_c_1_486
Type: CAZyme
Location: 613917 - 616256 (+)
Gene ID: Rep_450_c_1_487
Type: pfam
Location: 616416 - 617915 (-)
Gene ID: Rep_450_c_1_488
Type: pfam
Location: 617923 - 619683 (-)
Gene ID: Rep_450_c_1_489
Type: CAZyme
Location: 619787 - 621535 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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