Cluster: Rep_450_CGC55
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_450
- CGC Family ID: CGCFAM_08891
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_450_c_2 | Rep_450_c_2_162 | 179725 | 182961 | + | 1.B.14.6.1 |
| TC | Rep_450_c_2 | Rep_450_c_2_163 | 182976 | 184763 | + | 8.A.46.1.4 |
| pfam | Rep_450_c_2 | Rep_450_c_2_164 | 184860 | 185837 | + | Metallophos |
| pfam | Rep_450_c_2 | Rep_450_c_2_165 | 185921 | 188347 | + | Metallophos | PQQ | PQQ_2 | PQQ_2 | PQQ_2 | Beta-prop_ACSF4 | Beta-prop_ACSF4 | Beta-prop_ACSF4 | MetallophosN |
| CAZyme | Rep_450_c_2 | Rep_450_c_2_166 | 188349 | 190529 | + | GH29 |
Gene ID: Rep_450_c_2_162
Type: TC
Location: 179725 - 182961 (+)
Type: TC
Location: 179725 - 182961 (+)
Gene ID: Rep_450_c_2_163
Type: TC
Location: 182976 - 184763 (+)
Type: TC
Location: 182976 - 184763 (+)
Gene ID: Rep_450_c_2_164
Type: pfam
Location: 184860 - 185837 (+)
Type: pfam
Location: 184860 - 185837 (+)
Gene ID: Rep_450_c_2_165
Type: pfam
Location: 185921 - 188347 (+)
Type: pfam
Location: 185921 - 188347 (+)
Gene ID: Rep_450_c_2_166
Type: CAZyme
Location: 188349 - 190529 (+)
Type: CAZyme
Location: 188349 - 190529 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Species
Phocaeicola massiliensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.